PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan015958

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

C3H

Protein Properties

Length: 432aa MW: 49560.7 Da PI: 10.0966

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-60549	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.7	6.5e-06	276	299	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC ff + G+C G +CkF+H+ Aan015958 276 KSILCEFFKA-GQCAKGFKCKFSHD 299 66797777.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.159	274	301	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.15E-6	274	299	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-4	274	300	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.0E-4	276	300	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.084	344	382	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.3	344	381	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
XVSLVWAREA CRRRSARVRR PEAKPVFVLF KGSGSSSGWR KLTDLAPLTV TTAPSAKITF 60 LSSPAQHHEA KKASCLSHLE SKAPLDQQAE MEPKQATFLL RLSSLPKHSH HQHLLPVPPP 120 ENWQINIFPS IDIFQKFKWK NFIIDFFIKS YQSIKTQTCP HKTLVRSNSR IXPIILSFLS 180 RNIDNKKMPP KQSKSEIAKK QKIVEDKTFG LKNKNKSKNV QKYVQSLHQN VQPKPDPSKL 240 AAKKRKEEEK AREKELNDLF KVAVVQPKVP IGVDPKSILC EFFKAGQCAK GFKCKFSHDL 300 NVQRKGEKID IFSDKRDEGT MEDWDQETLE KVVASKGKEY NQNKPTDIVC KHFLEAVEKK 360 QYGWFWVCPN GGKQCHYRHA LPPGYILKSQ MKALLEEESN KLAIEEEIED QVIAVYLYLE 420 LFFSGHLTCP CX

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

XVSLVWAREA CRRRSARVRR PEAKPVFVLF KGSGSSSGWR KLTDLAPLTV TTAPSAKITF  60
LSSPAQHHEA KKASCLSHLE SKAPLDQQAE MEPKQATFLL RLSSLPKHSH HQHLLPVPPP  120
ENWQINIFPS IDIFQKFKWK NFIIDFFIKS YQSIKTQTCP HKTLVRSNSR IXPIILSFLS  180
RNIDNKKMPP KQSKSEIAKK QKIVEDKTFG LKNKNKSKNV QKYVQSLHQN VQPKPDPSKL  240
AAKKRKEEEK AREKELNDLF KVAVVQPKVP IGVDPKSILC EFFKAGQCAK GFKCKFSHDL  300
NVQRKGEKID IFSDKRDEGT MEDWDQETLE KVVASKGKEY NQNKPTDIVC KHFLEAVEKK  360
QYGWFWVCPN GGKQCHYRHA LPPGYILKSQ MKALLEEESN KLAIEEEIED QVIAVYLYLE  420
LFFSGHLTCP CX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017238516.1	1e-144	PREDICTED: zinc finger CCCH domain-containing protein 11-like
Swissprot	Q0JHZ2	1e-131	C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBL	A0A2U1NXJ4	1e-177	A0A2U1NXJ4_ARTAN; Zinc finger C-x8-C-x5-C-x3-H type family protein
STRING	ERM95716	1e-131	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20280.1	1e-123	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]