PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan015985

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

NAC

Protein Properties

Length: 217aa MW: 24596.3 Da PI: 9.7218

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41931528	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-146933	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.2	9.4e-55	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 +ppGfrFhPtdeel+++yL +kv ++++ + ++i evd++kvePw+Lp+++k +ekewyfF+ rdkky+tg r+nrat+sgyWkatgkdke+l+ ++ lv Aan015985 16 MPPGFRFHPTDEELITHYLSNKVVDTNFFA-KAIGEVDMNKVEPWELPRMAKLGEKEWYFFCLRDKKYPTGLRTNRATASGYWKATGKDKEILK-GRVLV 113 79***********************888.88***********888899***********************************9.99* PP NAM 101 glkktLvfykgrapkgektdWvmheyrle 129 g+kktLvfy grapkgekt+Wv+he+rle Aan015985 114 GMKKTLVFYMGRAPKGEKTNWVIHEFRLE 142 **************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-62	12	167	IPR003441	NAC domain
PROSITE profile	PS51005	56.83	16	166	IPR003441	NAC domain
Pfam	PF02365	1.3E-28	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MEKLTNLGQD EDQMDMPPGF RFHPTDEELI THYLSNKVVD TNFFAKAIGE VDMNKVEPWE 60 LPRMAKLGEK EWYFFCLRDK KYPTGLRTNR ATASGYWKAT GKDKEILKGR VLVGMKKTLV 120 FYMGRAPKGE KTNWVIHEFR LEGKFSQQNL PKSAKNEWVI SRVFHKNSSG KKVHISGLLT 180 MDSGDITTSL PPLMDSAPSF GGTIINSSMP APCFSNP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-55	13	172	17	174	NAC domain-containing protein 19
3swm_B	4e-55	13	172	17	174	NAC domain-containing protein 19
3swm_C	4e-55	13	172	17	174	NAC domain-containing protein 19
3swm_D	4e-55	13	172	17	174	NAC domain-containing protein 19
3swp_A	4e-55	13	172	17	174	NAC domain-containing protein 19
3swp_B	4e-55	13	172	17	174	NAC domain-containing protein 19
3swp_C	4e-55	13	172	17	174	NAC domain-containing protein 19
3swp_D	4e-55	13	172	17	174	NAC domain-containing protein 19
4dul_A	4e-55	13	172	14	171	NAC domain-containing protein 19
4dul_B	4e-55	13	172	14	171	NAC domain-containing protein 19
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed at low levels in leaves. {ECO:0000269\|PubMed:17098808}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023730024.1	1e-130	NAC domain-containing protein 79-like
Swissprot	Q9FLR3	1e-107	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	A0A2U1L3N7	1e-159	A0A2U1L3N7_ARTAN; NAC domain containing protein
STRING	XP_007155297.1	1e-113	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.1	1e-109	NAC domain containing protein 80

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]