PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan016078

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

bZIP

Protein Properties

Length: 356aa MW: 40399.6 Da PI: 5.7788

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S55196313	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-67160994	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.9	4e-12	71	120	4	57
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee.kvkeLeaeNkaLkkeleelkkeva 57 +k+ rr+++NReAAr+sR+RKka++++Le + k L+ e ele+ k ++a Aan016078 71 DKVLRRLAQNREAARKSRLRKKAYVQQLEAsRLKLLQLEQ-----ELEQTKAQCA 120 7999************************963666666555.....7888888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.3E-6	68	128	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.657	70	114	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.2E-8	71	123	No hit	No description
Pfam	PF00170	2.2E-8	71	120	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.3E-7	72	118	No hit	No description
PROSITE pattern	PS00036	0	75	90	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.4E-24	160	234	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
XHYINSKRMD VYEPMNQFSM WGDYKGNIYQ DAATTMILDV DTKLDNQSED TSHTTNGPSN 60 QMIKKQINQI DKVLRRLAQN REAARKSRLR KKAYVQQLEA SRLKLLQLEQ ELEQTKAQCA 120 LMSAGVNAGQ LGFPGAANSG IAAFEIEYER WVEEQNKRTN ALKTALMNSS MSEDDLSNLV 180 TDTFNHYASL FTIKENAAKT DVCYLISGVW KTSTERLFLW IGGFRPSDLL KVLVPQLELL 240 DQQSHDLYNL IQACQQAEDS LSQGMEKLQQ TLADAVGRGE ALGEGSYEMH KAIEKLEELV 300 RLVIQADYVR KETLQQTLRN LTPRQAAQGL ISLGEYFQRL RDLSSAWAMR LCEPAL

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

XHYINSKRMD VYEPMNQFSM WGDYKGNIYQ DAATTMILDV DTKLDNQSED TSHTTNGPSN  60
QMIKKQINQI DKVLRRLAQN REAARKSRLR KKAYVQQLEA SRLKLLQLEQ ELEQTKAQCA  120
LMSAGVNAGQ LGFPGAANSG IAAFEIEYER WVEEQNKRTN ALKTALMNSS MSEDDLSNLV  180
TDTFNHYASL FTIKENAAKT DVCYLISGVW KTSTERLFLW IGGFRPSDLL KVLVPQLELL  240
DQQSHDLYNL IQACQQAEDS LSQGMEKLQQ TLADAVGRGE ALGEGSYEMH KAIEKLEELV  300
RLVIQADYVR KETLQQTLRN LTPRQAAQGL ISLGEYFQRL RDLSSAWAMR LCEPAL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024978663.1	0.0	TGACG-sequence-specific DNA-binding protein TGA-1A-like isoform X2
Refseq	XP_024978664.1	0.0	TGACG-sequence-specific DNA-binding protein TGA-1A-like isoform X2
Swissprot	P14232	1e-132	TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBL	A0A2U1QNF2	0.0	A0A2U1QNF2_ARTAN; Basic-leucine zipper domain-containing protein
STRING	VIT_07s0031g01320.t01	1e-142	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-117	bZIP family protein

Publications ? help Back to Top
Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems. Plant Mol. Biol., 2000. 42(5): p. 679-88 [PMID:10809441] Johnson C,Boden E,Desai M,Pascuzzi P,Arias J In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor. Plant J., 2001. 28(2): p. 237-43 [PMID:11722767] Katagiri F,Seipel K,Chua NH Identification of a novel dimer stabilization region in a plant bZIP transcription activator. Mol. Cell. Biol., 1992. 12(11): p. 4809-16 [PMID:1406663] Miao ZH,Lam E Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants. Plant J., 1995. 7(6): p. 887-96 [PMID:7599649] Pascuzzi P,Hamilton D,Bodily K,Arias J Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor. J. Biol. Chem., 1998. 273(41): p. 26631-7 [PMID:9756903]