PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan016123
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family GRAS
Protein Properties Length: 306aa    MW: 34939.1 Da    PI: 6.7114
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41914968PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-101133PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.81.5e-112730574373
       GRAS  74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAee 171
                s+++l+a+++++ev+P+++f++++aN aIlea+  ++ vHiiDfdi+qG Q+++Llq+La+  ++ p+lR+Tgv++pes+      l+++g+rL+++A+ 
  Aan016123   7 SKDRLSAMQVLFEVCPCFRFGFMAANGAILEAFVVKKNVHIIDFDINQGSQYITLLQTLAET-NSRPHLRLTGVDDPESVqrPVGGLNHIGQRLKELAKM 105
                7899********************************************************95.778************99888899************** PP

       GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                l+++fef+  v+ +++ +e+ +L+++pgEa++Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++Fl+rf ea +yysa+fd+l
  Aan016123 106 LNLDFEFTS-VVATTAIIEPGSLNCRPGEAVIVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTNTAPFLHRFHEAYSYYSAMFDCL 204
                *********.7999************************************************************************************** PP

       GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                ea+lpres+er++vE+++l+r+ivn++aceg+er+er e  +kW++r+++aGF+  p+sek+++ ++ l+++++++ y+++ e +++ +gW+d+ L+++S
  Aan016123 205 EATLPRESQERVNVEKQCLARDIVNIIACEGEERIERYEVSGKWKARMMMAGFRVCPISEKVNDMVRKLIKEYSER-YKMKVETNAIHFGWEDKVLIVAS 303
                **************************************************************************66.*********************** PP

       GRAS 372 aW 373
                aW
  Aan016123 304 AW 305
                ** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.691287IPR005202Transcription factor GRAS
PfamPF035145.1E-1107305IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
XSREPPSKDR LSAMQVLFEV CPCFRFGFMA ANGAILEAFV VKKNVHIIDF DINQGSQYIT  60
LLQTLAETNS RPHLRLTGVD DPESVQRPVG GLNHIGQRLK ELAKMLNLDF EFTSVVATTA  120
IIEPGSLNCR PGEAVIVNFA FQLHHMPDES VSTVNQRDQL LRMVKSLNPK LVTVVEQDMN  180
TNTAPFLHRF HEAYSYYSAM FDCLEATLPR ESQERVNVEK QCLARDIVNI IACEGEERIE  240
RYEVSGKWKA RMMMAGFRVC PISEKVNDMV RKLIKEYSER YKMKVETNAI HFGWEDKVLI  300
VASAWM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-531530581374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.195170.0trichome
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022034752.10.0scarecrow-like protein 1
RefseqXP_022034753.10.0scarecrow-like protein 1
RefseqXP_022034754.10.0scarecrow-like protein 1
RefseqXP_024973072.10.0scarecrow-like protein 1
RefseqXP_024973073.10.0scarecrow-like protein 1
RefseqXP_024973074.10.0scarecrow-like protein 1
RefseqXP_024973075.10.0scarecrow-like protein 1
RefseqXP_024973076.10.0scarecrow-like protein 1
SwissprotQ9SDQ31e-154SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A2U1PLG50.0A0A2U1PLG5_ARTAN; GRAS protein
STRINGPOPTR_0002s07430.11e-173(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.11e-156SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]