PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan016169

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

TCP

Protein Properties

Length: 257aa MW: 26993.1 Da PI: 9.9756

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-130713	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.8	1.9e-38	22	115	2	95
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa 95 ++kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++ + + s++nss+++a ++a Aan016169 22 TVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVAVRSNNNSSITAALDQKA 115 689******************************************************************9986666666666566653333322 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.892	28	82	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.3E-33	28	125	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MSTDGTTNGV PISSQPGNGV LTVKKPPAKD RHSKVDGRGR RIRMPIICAA RVFQLTRELG 60 HKSDGQTIEW LLRQAEPSII AATGTGTTPA SFSTVSVAVR SNNNSSITAA LDQKAAPPVG 120 HHHHMLSPAP FLLGKRLRAD DEIDKDDGQG GNHMGQAVAV SGGGGGGRGG FWALPARSDF 180 GQVWSFAAAP QDMNSMAAAQ QGRFYQQQQQ QQQVAMGEAS AARVGNYLPI TQGHLNLLAS 240 LQGPPQQSSG GGKDDNE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023736444.1	1e-120	transcription factor TCP7-like
Swissprot	Q9FMX2	4e-84	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A2J6K9I8	1e-118	A0A2J6K9I8_LACSA; Uncharacterized protein
STRING	Solyc04g009180.1.1	3e-98	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	3e-62	TCP family protein