PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan016178
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family MYB
Protein Properties Length: 108aa    MW: 12366.2 Da    PI: 9.6003
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S56551598PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.63e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
        Aan016178 14 KGPWTPEEDIILVTYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding41.72.6e-1367108144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      rg++T  E+  +v++ ++lG++ W++Ia++++  Rt++++k++w
        Aan016178  67 RGNFTSHEEGMIVHLQALLGNK-WAAIASYLP-QRTDNDIKNYW 108
                      89********************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-24564IPR009057Homeodomain-like
PROSITE profilePS5129424.954965IPR017930Myb domain
SuperFamilySSF466892.2E-3111108IPR009057Homeodomain-like
SMARTSM007171.9E-141363IPR001005SANT/Myb domain
PfamPF002497.0E-171461IPR001005SANT/Myb domain
CDDcd001679.04E-121661No hitNo description
Gene3DG3DSA:1.10.10.601.7E-1965108IPR009057Homeodomain-like
PROSITE profilePS5129414.60666108IPR017930Myb domain
SMARTSM007170.001766108IPR001005SANT/Myb domain
PfamPF002495.0E-1167108IPR001005SANT/Myb domain
CDDcd001673.06E-769108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MGRPPCCDKV GIKKGPWTPE EDIILVTYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TSHEEGMIVH LQALLGNKWA AIASYLPQRT DNDIKNYW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-231210825120MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During seed development, gradually down-regulated towards the onset of ripening (veraison). During berry skin development, dramatic decrease to full repression at veraison, followed by a slight increase towards ripening. In flowers, barely detectable in stamens, at the interface of filaments and anthers. {ECO:0000269|PubMed:22018045}.
UniprotTISSUE SPECIFICITY: Restricted to stomatal guard cells. Mostly expressed in leaves, cotyledons, hypocotyls, seeds and ripened berry skins. {ECO:0000269|PubMed:22018045}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016725886.16e-77PREDICTED: myb-related protein 306-like
RefseqXP_022743457.16e-77myb-related protein 306-like
SwissprotB3VTV74e-77MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A1Q3BPR51e-75A0A1Q3BPR5_CEPFO; Myb_DNA-binding domain-containing protein
TrEMBLA0A2U1MJF74e-76A0A2U1MJF7_ARTAN; Myb domain protein 60
STRINGAquca_014_00947.14e-76(Aquilegia coerulea)
STRINGevm.model.supercontig_73.133e-76(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.17e-79myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]