PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan016408
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family HD-ZIP
Protein Properties Length: 267aa    MW: 29669.6 Da    PI: 8.5833
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-17129PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox43.55.2e-14122175256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rk+ ++tk q   Le++ + +++++  +++eLA++l+L  rqV vWFqNrRa+ k
  Aan016408 122 RKKLRLTKAQSALLEQALQTSSTLNP-QKQELARELKLRPRQVEVWFQNRRARTK 175
                678899******************96.679***********************98 PP
2HD-ZIP_I/II109.13e-35122210191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+k q++lLE+  +++++L+p +K+elareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++lkeen+rL+ke +eL+ +l
    Aan016408 122 RKKLRLTKAQSALLEQALQTSSTLNP-QKQELARELKLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLKEENTRLHKELQELK-AL 210
                  69***********************9.689*********************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-13107178IPR009057Homeodomain-like
PROSITE profilePS5007112.811118177IPR001356Homeobox domain
SMARTSM003899.0E-12120181IPR001356Homeobox domain
SuperFamilySSF466895.99E-14121186IPR009057Homeodomain-like
PfamPF000461.9E-11122175IPR001356Homeobox domain
CDDcd000862.61E-12122178No hitNo description
PROSITE patternPS000270152175IPR017970Homeobox, conserved site
SMARTSM003403.0E-20177222IPR003106Leucine zipper, homeobox-associated
PfamPF021832.9E-10177211IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGFDSVCNKG LVLELGLNSS MVENNATNTS NKPNLNFDPS LTLTIASDHD HGVNKRKHAC  60
VGGGGDHHGG LHRQDSVSGG GSSFSIASVS VKREREVKSE ESERVISATS VEEDDDGIIN  120
GRKKLRLTKA QSALLEQALQ TSSTLNPQKQ ELARELKLRP RQVEVWFQNR RARTKLKQTE  180
VDCEYLKKCC ETLKEENTRL HKELQELKAL KMSPIKPLYM QLPAATLTMC PSCERIGDTT  240
STTKTRPFTM DTKPHFFNPF TNPSPAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169177RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022021369.11e-132homeobox-leucine zipper protein HAT9-like isoform X2
SwissprotP466041e-78HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2U1Q6G91e-172A0A2U1Q6G9_ARTAN; HD-ZIP protein
STRINGEOX917923e-96(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.16e-77HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]