PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan016550

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

WRKY

Protein Properties

Length: 147aa MW: 16699.3 Da PI: 9.8721

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S54984581	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-62376	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	84.4	1.1e-26	93	143	1	51
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveit 51 ldDgy+WrKYGqK vk+s+fpr+YY+Ctsa+C+vkk++er+ +dp++v++t Aan016550 93 LDDGYRWRKYGQKAVKNSHFPRGYYKCTSASCNVKKRIERCMSDPSYVVTT 143 59*********************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.5E-27	78	143	IPR003657	WRKY domain
SuperFamily	SSF118290	2.22E-23	85	143	IPR003657	WRKY domain
PROSITE profile	PS50811	24.409	88	147	IPR003657	WRKY domain
SMART	SM00774	4.3E-24	93	145	IPR003657	WRKY domain
Pfam	PF03106	3.7E-19	94	143	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
XANNNGDLDY KKDDVITTAD EETSSVVLSG QQQPSSPNSS CISSPAHQLL HKPNKQCMKA 60 KKTMSGNETK TTKKKKEKEA RFAFMTRTEI DHLDDGYRWR KYGQKAVKNS HFPRGYYKCT 120 SASCNVKKRI ERCMSDPSYV VTTDTRX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	8e-22	83	143	7	67	Probable WRKY transcription factor 4
2lex_A	8e-22	83	143	7	67	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021969411.1	3e-56	probable WRKY transcription factor 23
Swissprot	O22900	9e-34	WRK23_ARATH; WRKY transcription factor 23
TrEMBL	A0A2U1LCI4	2e-77	A0A2U1LCI4_ARTAN; WRKY domain-containing protein
STRING	Solyc01g079260.2.1	1e-38	(Solanum lycopersicum)
STRING	PGSC0003DMT400023368	1e-38	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47260.1	1e-33	WRKY DNA-binding protein 23

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Prát T, et al. WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity. PLoS Genet., 2018. 14(1): p. e1007177 [PMID:29377885]