PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan016622
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family MYB
Protein Properties Length: 283aa    MW: 31970.5 Da    PI: 5.146
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S54990071PU_unrefUnigeneView CDS
gnl|UG|Aan#S55186052PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-90396PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.7e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+llvd++++ G gtW++ ++  g++R++k+c++rw +yl
        Aan016622 14 KGAWTPEEDKLLVDYITKNGHGTWRSFPELAGLRRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding52.98.5e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE+e + +++ ++G++ W++Ia+ ++ gRt++++k++w+++l
        Aan016622  67 RGAFSSEEEETIFNLHSLHGNK-WAAIASQLP-GRTDNEIKNFWNSHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-22564IPR009057Homeodomain-like
PROSITE profilePS5129416.052961IPR017930Myb domain
SuperFamilySSF466891.72E-2812108IPR009057Homeodomain-like
SMARTSM007171.1E-101363IPR001005SANT/Myb domain
PfamPF002498.2E-151461IPR001005SANT/Myb domain
CDDcd001672.84E-81661No hitNo description
PROSITE profilePS5129425.27262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-2665115IPR009057Homeodomain-like
SMARTSM007179.3E-1666114IPR001005SANT/Myb domain
PfamPF002491.8E-1567112IPR001005SANT/Myb domain
CDDcd001675.86E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGRAPCCVKG EVKKGAWTPE EDKLLVDYIT KNGHGTWRSF PELAGLRRCG KSCRLRWTNY  60
LRPDIKRGAF SSEEEETIFN LHSLHGNKWA AIASQLPGRT DNEIKNFWNS HLRKRIPNKN  120
GTLHPPSKST EKKSTLPPTR QVADLEDARE EEMPEAMDHA LSSPATVISD SDNFLNDWGS  180
SDGETFQKHM DFEKVQCEIP TPRAIKFESD SYTVHTGAHI PVTSTSESCN QGVKEHIRLK  240
EEPEEITHAA EPQSSYEAEN DASDITLDLL LDFPNDGEYL EYV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-261111624128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.100130.0trichome
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024972452.11e-150transcription factor MYB41-like
RefseqXP_024972462.11e-150transcription factor MYB41-like
TrEMBLA0A2U1NB550.0A0A2U1NB55_ARTAN; MYB1
STRINGEOX960131e-75(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.12e-73myb domain protein 17