PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan016684
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family C2H2
Protein Properties Length: 244aa    MW: 26004.3 Da    PI: 8.8228
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55203070PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-105736PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029133155123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C+++F++   L  H r+H
  Aan016684 133 HECSICHRTFPTGQALGGHKRRH 155
                78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.8E-77497No hitNo description
PfamPF139129.6E-137499IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.42775102IPR007087Zinc finger, C2H2
SMARTSM003550.0147597IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SuperFamilySSF576672.8E-7128155No hitNo description
SMARTSM003550.059133155IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.203133155IPR007087Zinc finger, C2H2
PfamPF139126.9E-13133157IPR007087Zinc finger, C2H2
PROSITE patternPS000280135155IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MALEALNSPT TPAAPPSLHK GKRSKRPRVT MDDNNLVLPQ HASEEEYLAI CLMLLARGSP  60
TAAISTTTQP PHDTYKCSVC NKGFHSYQAL GGHKASHRKN NPEDSHSHPS TSGGAATPAA  120
ATSSVLKPSG KLHECSICHR TFPTGQALGG HKRRHYDGGS GGVTSSDGGA TSSTAPSQVV  180
QRDFDLNLPA MLPGVQLGLS VDCGKKSQLL LANEQEVESP HPSKKPRFST MEDRKLLLKL  240
EMEQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022036431.12e-86zinc finger protein ZAT10-like
TrEMBLA0A2U1N5W41e-102A0A2U1N5W4_ARTAN; Zinc finger, C2H2-like protein
STRINGVIT_03s0091g00690.t017e-63(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-37salt tolerance zinc finger