PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan016756

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

SBP

Protein Properties

Length: 205aa MW: 23449.6 Da PI: 8.7578

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41941833	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-39201	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.5	1.1e-39	115	189	2	76
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 Cqv+gC++ l ++k+yh+rhkvCe hsk+++v+v+g+ qrfCqqCsrfh l+efD++krsCr+rLa+hnerrrk Aan016756 115 CQVHGCSKSLVSCKDYHKRHKVCELHSKTAKVIVNGILQRFCQQCSRFHLLNEFDDGKRSCRKRLADHNERRRKL 189 *************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.3E-31	110	176	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.804	112	189	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.24E-36	113	191	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.4E-30	115	188	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MESWTFDSAS NMDFMSQNAI QGLEEMCFPQ VVGNSLLNPV MVANHNAFSE DHDMSFKLSN 60 SVVESDYKDY SGLFDLNLEK NVHQENSKVT NSPFEVSLPS KQTRMAGSVS RSLFCQVHGC 120 SKSLVSCKDY HKRHKVCELH SKTAKVIVNG ILQRFCQQCS RFHLLNEFDD GKRSCRKRLA 180 DHNERRRKLH VGRNGRLLPS YSINK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	6e-28	114	188	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024969784.1	3e-68	squamosa promoter-binding-like protein 6
TrEMBL	A0A2U1L845	1e-150	A0A2U1L845_ARTAN; SBP-like protein
STRING	EOY22129	3e-54	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	3e-43	SBP family protein