PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan016884
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family C3H
Protein Properties Length: 313aa    MW: 33056 Da    PI: 9.6266
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41966764PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-2390PU_refplantGDBView CDS
PUT-183a-Artemisia_annua-2391PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-061121241527
                -TTTTT-SS-SSS CS
    zf-CCCH  15 CkyGdrCkFaHgp 27 
                Ck+Gd+C+FaH++
  Aan016884 112 CKFGDKCRFAHSE 124
                ***********95 PP
2zf-CCCH35.61.6e-11284308227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                kt+ C +fa+ G+C +GdrC+FaHgp
  Aan016884 284 KTKMCENFAK-GQCTFGDRCHFAHGP 308
                899*******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.73663IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0423664IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-63762IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-73861IPR000571Zinc finger, CCCH-type
PfamPF146081.94461No hitNo description
SuperFamilySSF902294.45E-697127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.17497125IPR000571Zinc finger, CCCH-type
SMARTSM003560.9599124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-999127IPR000571Zinc finger, CCCH-type
PfamPF146080.053112122No hitNo description
SuperFamilySSF547912.78E-13170248IPR004088K Homology domain, type 1
SMARTSM003221.6E-9175245IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.106.3E-14175245IPR004088K Homology domain, type 1
PROSITE profilePS5008413.25176240IPR004088K Homology domain, type 1
PfamPF000131.3E-8178242IPR004088K Homology domain, type 1
CDDcd001059.31E-12178241No hitNo description
Gene3DG3DSA:4.10.1000.103.9E-15281312IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6282308IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.821282309IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-8282312IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-8284308IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEFGGRKRGR QDGGFNGAHK RPRDESENNN FTPGVGSKSK PCTKFFSTSG CPFGEGCHFL  60
HYVPGGYNAV KQLTNVGGPP GRKPPMQQPF AEGPPTPAKG KICNRINTPE GCKFGDKCRF  120
AHSEVELGSK SSFPAYEDPR AQPGPFNYGG GGGGGYQGRM EPGPPGLAAA SNFGQSATAK  180
ISIDGALAGP IIGKGGVNSK QICRLTGVKF AIRDHDTDPS QKNIELEGSF DQIKQASEMV  240
HELIMNLRSG GGGGGANGPP QRKFGGFQQQ QGGQGLGHGG NKIKTKMCEN FAKGQCTFGD  300
RCHFAHGPEE LRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.7950.0leaf
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024984594.11e-157zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-101C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2U1LDI40.0A0A2U1LDI4_ARTAN; K Homology domain-containing protein
STRINGXP_010673537.11e-112(Beta vulgaris)
STRINGXP_010265899.11e-112(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-45C3H family protein