PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan017024
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 27677.4 Da    PI: 8.6704
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55136020PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-76817PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.92.6e-284494151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krienk+nrqvtfskRr g+lKKA+E+SvLCda+v +i+fs++gkl  y++
  Aan017024 44 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVGLIVFSTKGKLCQYAT 94
               79*********************************************9986 PP
2K-box935e-311192109100
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 e + + s++ e+akLk+++e Lq + Rhl+Ged++sLslkeLq LeqqLe+sl++ Rs++n+l++e+i+elqkk k+l++en+ L+k+++e
  Aan017024 119 SELQSQGSWTLEHAKLKARMELLQXNXRHLVGEDIDSLSLKELQILEQQLETSLRRLRSRRNQLMFESISELQKKDKALKDENNLLSKEIKE 210
                55566789*********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.6473696IPR002100Transcription factor, MADS-box
SMARTSM004325.1E-303695IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-263858IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.03E-3041127IPR002100Transcription factor, MADS-box
CDDcd002658.99E-3643111No hitNo description
PfamPF003192.4E-244592IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-265873IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-267394IPR002100Transcription factor, MADS-box
PfamPF014861.1E-25122208IPR002487Transcription factor, K-box
PROSITE profilePS5129715.794124214IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
XPYLVKYSSS TPTNNNCCTW WLLVVLFCHF LTPNQWAGGC VTLKRIENKI NRQVTFSKRR  60
SGLLKKAHEI SVLCDADVGL IVFSTKGKLC QYATDTSSME RILERYERHS YTKRHLDASE  120
LQSQGSWTLE HAKLKARMEL LQXNXRHLVG EDIDSLSLKE LQILEQQLET SLRRLRSRRN  180
QLMFESISEL QKKDKALKDE NNLLSKEIKE KEKELELDQP LTVEQPTHES MSSXRCSX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-1641110673Myocyte-specific enhancer factor 2B
1tqe_Q4e-1641110673Myocyte-specific enhancer factor 2B
1tqe_R4e-1641110673Myocyte-specific enhancer factor 2B
1tqe_S4e-1641110673Myocyte-specific enhancer factor 2B
6c9l_A4e-1641110673Myocyte-specific enhancer factor 2B
6c9l_B4e-1641110673Myocyte-specific enhancer factor 2B
6c9l_C4e-1641110673Myocyte-specific enhancer factor 2B
6c9l_D4e-1641110673Myocyte-specific enhancer factor 2B
6c9l_E4e-1641110673Myocyte-specific enhancer factor 2B
6c9l_F4e-1641110673Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024976376.14e-91truncated transcription factor CAULIFLOWER A isoform X1
SwissprotQ6E6S74e-86AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A2U1LID81e-117A0A2U1LID8_ARTAN; Transcription factor, MADS-box, Transcription factor, K-box
STRINGXP_009792071.16e-88(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.17e-58AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]