PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan017050

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

CAMTA

Protein Properties

Length: 321aa MW: 36874 Da PI: 5.5234

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41950259	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-114950	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	161.5	1.6e-50	30	145	3	117
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 +e k+rwl+++ei+aiL n++ ++++ ++ + pksg+++L++rk++r+fr+DG +wkkkkdgktv+E+he+LKvg+ e +++yYah+e++ptf rrcywl Aan017050 30 EEaKTRWLRPNEIHAILCNHKYFTIHVKPVNMPKSGTVVLFDRKMLRNFRRDGRNWKKKKDGKTVKEAHEHLKVGSDERIHVYYAHGEDQPTFVRRCYWL 129 5559********************************************************************************************** PP CG-1 102 Leeelekivlvhylev 117 L+++le+ivlvhy+++ Aan017050 130 LDKKLEHIVLVHYRDT 145 ************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	74.259	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.9E-72	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.2E-45	31	144	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MEAAVQSQLV GSEIHGFKTM QDLDVPTMFE EAKTRWLRPN EIHAILCNHK YFTIHVKPVN 60 MPKSGTVVLF DRKMLRNFRR DGRNWKKKKD GKTVKEAHEH LKVGSDERIH VYYAHGEDQP 120 TFVRRCYWLL DKKLEHIVLV HYRDTEEQGS PNVESHSSSD PPTSWNLSEG NDGVEQLYNV 180 EPNETIINHE KRLHEINTLE WEELVIPDES NSTSITPQGG NISYFDQDDQ YGLNGLVDAM 240 EPKHVNSSTG ILETMGIHGI KNQDSFGRWM NYAMTDSPEI VDPNLIPEPL VPAGRENVRT 300 PSGYNDQLHS LQQIFTINEV X

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Aan.20228	0.0	trichome

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023765664.1	1e-157	calmodulin-binding transcription activator 6-like
Swissprot	O23463	6e-87	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A2U1P956	0.0	A0A2U1P956_ARTAN; IQ motif, EF-hand binding site
STRING	XP_008458373.1	1e-111	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16940.1	1e-100	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]