PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan017082
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family MYB
Protein Properties Length: 222aa    MW: 25479.9 Da    PI: 10.706
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-187160990PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.41.9e-141158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+  ++ +G g+W++ +++ g++R++k+c++rw +yl
        Aan017082 11 KGPWTPEEDRKLLPTFNNMGHGSWRSLPAKAGLKRCGKSCRLRWTNYL 58
                     79********************************************97 PP
2Myb_DNA-binding56.46.9e-1864108147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++ eE+  +++++++lG++ W+tIa++++ +Rt++++k++w+++
        Aan017082  64 RGKFSLEEERTIIQLHALLGNR-WSTIAAHLP-RRTDNEIKNHWNSH 108
                      89********************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.142658IPR017930Myb domain
SuperFamilySSF466897.19E-298105IPR009057Homeodomain-like
SMARTSM007176.3E-101060IPR001005SANT/Myb domain
PfamPF002492.2E-131158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-211265IPR009057Homeodomain-like
CDDcd001673.89E-71358No hitNo description
PROSITE profilePS5129426.98859113IPR017930Myb domain
SMARTSM007173.3E-1663111IPR001005SANT/Myb domain
PfamPF002493.2E-1664108IPR001005SANT/Myb domain
CDDcd001672.99E-1166109No hitNo description
Gene3DG3DSA:1.10.10.603.1E-2666113IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
XYLGFGIGVK KGPWTPEEDR KLLPTFNNMG HGSWRSLPAK AGLKRCGKSC RLRWTNYLRP  60
DIKRGKFSLE EERTIIQLHA LLGNRWSTIA AHLPRRTDNE IKNHWNSHIK KRMTKMGIDP  120
MTHKPKSGTQ LLGTNLNHMA QWEAARLEAE ARLVQKPNNH LNQVSYNHVS PQSIHDLHKT  180
PTTLPPQNLP CLDVLKVWQG NLWSNYSINN ESLQSLISSR DT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28111137108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, epidermis and mesophyll cells of young leaves, stems, petals, sepals, carpels and stamens. {ECO:0000269|PubMed:23709630}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023752258.11e-135transcription factor MYB16-like
SwissprotQ9LXF11e-78MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A2U1NDQ61e-149A0A2U1NDQ6_ARTAN; Homeodomain-like protein
TrEMBLA0A2Z0DSE21e-149A0A2Z0DSE2_ARTAN; MIXTA-like2 transcription factor
STRINGXP_004298414.16e-89(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.15e-73myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]