PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan017117

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

GRAS

Protein Properties

Length: 161aa MW: 19219 Da PI: 9.7898

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41934443	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-81235	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	140.4	1.9e-43	5	158	220	373
GRAS 220 leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl 319 +s+rd+vLklv++++P++++++ + +++++ F++rf eal +ysalfd+++a + r++e+r++ E++++gre++nv+aceg er+er et+++W+ r Aan017117 5 KDSPRDRVLKLVRDMKPDLFIHSIVNGSYSAPFFVTRFKEALFHYSALFDMFDARMDRDDEHRQNFEKAFFGREVMNVIACEGHERVERPETYKQWQVRT 104 45689********************************************************************************************* PP GRAS 320 eeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++aGFk+ +++ ++ +q k+ ++ +++ + +++ +++++gWk+r L++ S+W Aan017117 105 SRAGFKQRRVDREIFSQLKSKMKVGYNKDFVLDDYGKWMLQGWKGRILYASSCW 158 *******************999899*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	23.782	1	139	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.6E-41	5	158	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
ETNVKDSPRD RVLKLVRDMK PDLFIHSIVN GSYSAPFFVT RFKEALFHYS ALFDMFDARM 60 DRDDEHRQNF EKAFFGREVM NVIACEGHER VERPETYKQW QVRTSRAGFK QRRVDREIFS 120 QLKSKMKVGY NKDFVLDDYG KWMLQGWKGR ILYASSCWVP A

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024968070.1	6e-87	scarecrow-like protein 14
Swissprot	P0C884	6e-71	SCL34_ARATH; Scarecrow-like protein 34
TrEMBL	A0A2U1KKK9	1e-112	A0A2U1KKK9_ARTAN; GRAS protein
STRING	XP_009375902.1	6e-75	(Pyrus x bretschneideri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	8e-66	GRAS family protein