PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan017235
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family C3H
Protein Properties Length: 366aa    MW: 40393.1 Da    PI: 7.3927
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-514160992PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH215.8e-07140160526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+ f++ G C  Gd+C +aHg
  Aan017235 140 PCPEFRK-GSCVKGDTCEYAHG 160
                8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS502979.092151IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.4E-5757IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:4.10.1000.101.8E-4132161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.249135162IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-4135161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-4167198IPR000571Zinc finger, CCCH-type
SMARTSM0035646170193IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.23170194IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
XGAVSAVETV RVLIEACADL NITDDNGNKP VELIARGAKS SKKKVLEMLL SGLSVEETEI  60
SISSTEETDV VAAKKEYPID VSMPDINEGV YGTDEFRMYM FKVKPCSRAY SHDWTECPFV  120
HPGENARRRD PRKHQYTCVP CPEFRKGSCV KGDTCEYAHG VFESWLHPAQ YRTRLCKDET  180
GCARKVCFFA HKVDELRPLY ASTGSAVPSP KSGPVEMGSM SPLGLGSMGS TPPMSPSIAP  240
VNNNMWQNKF VHVTPPALQL PGSRLKTSLN ARDLDLELEM LQRQQMIDDL SSNLYNNSPR  300
FGEMTPTNLE DVYGSPSRQQ MRQNSNQLRS TYPSSPGRKS SSFGFDSSAA VAQAVMNSRS  360
GSFAKX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.64170.0trichome
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023752893.10.0zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE61e-134C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A2U1NGT40.0A0A2U1NGT4_ARTAN; Zinc finger, CCCH-type, Ankyrin repeat-containing domain protein
STRINGGorai.011G289400.11e-161(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-127C3H family protein