PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan017238
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family C3H
Protein Properties Length: 310aa    MW: 35175.1 Da    PI: 7.0739
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-67361PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.67.6e-07112133426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 +C+ f++ G C+ Gd+C ++Hg
  Aan017238 112 NPCPEFRK-GNCSKGDTCEYSHG 133
                59******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.1E-5108134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.347109135IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-5112133IPR000571Zinc finger, CCCH-type
SMARTSM0035634143166IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MMMMIHSHSN NNNPTVHIPP PPHASWDDPF SFDDIEMLSA ADHHHDQQQQ HLYNDDDVLS  60
ESIFSSDHFR MYEFKIRRCS RGGSHDWTDC PFAHPGEKAR RRDPRKVHYS GNPCPEFRKG  120
NCSKGDTCEY SHGVFECWLH PCRYRTQPCK DGVHCRRRIC FFAHTADQLR VLPLSQLGPT  180
QPESYDGSPS RFTSLVSSPT STLYTSSFSP PMSPVSSMGV NELTSSVRNM SIGSGFGSPR  240
NMSTLRPGFG SLPSTPTRNP TRVNLFDQWV DEEEEPVMER VESGRDIRAK IYAKLSRENS  300
LAGRVDSVSY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024996928.11e-135zinc finger CCCH domain-containing protein 20-like
SwissprotO821997e-89C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A2U1KMC61e-165A0A2U1KMC6_ARTAN; Violaxanthin de-epoxidase-related protein
STRINGGLYMA08G03540.11e-109(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.13e-78C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]