PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan017279
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family CO-like
Protein Properties Length: 347aa    MW: 38592.7 Da    PI: 4.9655
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S56477487PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-82160992PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.87.1e-06435536
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg 36
               +C+ + e +   +C+++  +lC +C  + H+ 
  Aan017279  4 NCDYCREARSMVYCRSDAAYLCLSCDRNVHSA 35
               6***************************9954 PP
2zf-B_box26.71.2e-084790541
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
               +C++++++++   C d +  lC++C   +H+g       H++++
  Aan017279 47 VCDNCNSQPALVRCVDEKASLCQNCDWVGHNGansdassHSRQT 90
               8*****************************88888888888765 PP
3CCT56.88.2e-20290332143
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                R  a+lRYkeK+k RkFeK++rY++RKa+A+ R+RvKGrF k+
  Aan017279 290 RSDAVLRYKEKKKMRKFEKRVRYATRKARADVRKRVKGRFIKA 332
                889*************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000213.19E-6535No hitNo description
SMARTSM003364.5E-6547IPR000315B-box-type zinc finger
PROSITE profilePS501199.471547IPR000315B-box-type zinc finger
PROSITE profilePS501198.9024391IPR000315B-box-type zinc finger
CDDcd000213.80E-64791No hitNo description
SMARTSM003360.424891IPR000315B-box-type zinc finger
PfamPF062034.8E-15290332IPR010402CCT domain
PROSITE profilePS5101715.041290332IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGYNCDYCRE ARSMVYCRSD AAYLCLSCDR NVHSANPLSK RHMRTLVCDN CNSQPALVRC  60
VDEKASLCQN CDWVGHNGAN SDASSHSRQT LNCYSGCPSA VELSSIWSFM SDSCEQEMGS  120
MSIADNPDEP SDNNKIQDSS VELENNSKIS CSGTKEPEQM VDDGLYDDFT MDEVDMNIEN  180
YEELFGVGHN DPKHLFAKDG IDSLFGKRDG KKESANTVQP ECSNAASVDS LISCKTEPNP  240
CYARQQSNIS FSSLTGESSG GEYQDCGASS MVPMDEPPWS TPGPGSTTIR SDAVLRYKEK  300
KKMRKFEKRV RYATRKARAD VRKRVKGRFI KAGDAYDYDP MNEARSF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021998233.10.0zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9LUA91e-130COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
SwissprotQ9SSE51e-130COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A2U1NHF40.0A0A2U1NHF4_ARTAN; B-box-type zinc finger, CCT domain protein
STRINGXP_009768363.11e-145(Nicotiana sylvestris)
STRINGXP_004303586.11e-145(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-103B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]