PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan017400

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

bHLH

Protein Properties

Length: 423aa MW: 46145.4 Da PI: 7.1612

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S55092318	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-66485	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.4	0.00059	235	273	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Aan017400 235 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 273 6677888999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.725	223	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.19E-6	233	277	No hit	No description
SuperFamily	SSF47459	7.33E-10	233	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-7	237	279	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MNRGNVLQSS PVQQMIAGGP NGWWSMMATT RPSTPPPPQQ PFFASSAQPH FFPHQYAPPL 60 TIPSSQAPWH NNQENPDSLS QLLMSGLVSE EDKSALSHMQ QVKKLENWEQ QLLLRDHHRQ 120 QQQHNSLNAQ SVEESTIKQE NSLNYGSSYG QGNGEFHGTK PSNWSNQMIP VSSPTSCVSS 180 VSNSMLDFST TTSNKADGRH PPPDRSSECN STATGGALKK AKIQPSSSQS TFKVRKEKLG 240 DRITALHQLV SPFGKTDTAS VLLEAIGYIR FLQSQIEALS LPYLGGGSAG NMRNHQHSVQ 300 QGERNCLFPE DPGQLVNDSC MKMKGAALDQ DSHEEPKKDL RSRGLCLVPV SCTMQVGSDN 360 GADYWAPALN GGSGKRIKGL GLTEYQGARV VYVFALNEED PSRNEITSLA VTLLNNISKA 420 DCS

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MNRGNVLQSS PVQQMIAGGP NGWWSMMATT RPSTPPPPQQ PFFASSAQPH FFPHQYAPPL  60
TIPSSQAPWH NNQENPDSLS QLLMSGLVSE EDKSALSHMQ QVKKLENWEQ QLLLRDHHRQ  120
QQQHNSLNAQ SVEESTIKQE NSLNYGSSYG QGNGEFHGTK PSNWSNQMIP VSSPTSCVSS  180
VSNSMLDFST TTSNKADGRH PPPDRSSECN STATGGALKK AKIQPSSSQS TFKVRKEKLG  240
DRITALHQLV SPFGKTDTAS VLLEAIGYIR FLQSQIEALS LPYLGGGSAG NMRNHQHSVQ  300
QGERNCLFPE DPGQLVNDSC MKMKGAALDQ DSHEEPKKDL RSRGLCLVPV SCTMQVGSDN  360
GADYWAPALN GGSGKRIKGL GLTEYQGARV VYVFALNEED PSRNEITSLA VTLLNNISKA  420
DCS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024968040.1	0.0	transcription factor bHLH68-like
Swissprot	Q8S3D1	2e-93	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A2U1LUD3	0.0	A0A2U1LUD3_ARTAN; Myc-type, basic helix-loop-helix (BHLH) domain-containing protein
STRING	VIT_11s0016g03560.t01	1e-150	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	6e-89	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]