PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan017432

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

bHLH

Protein Properties

Length: 186aa MW: 21055 Da PI: 8.8354

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-544160994	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.3	1.1e-12	119	164	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + +++L Av+YIk+Lq Aan017432 119 SIAERVRRTRISERMRKLQELVPHM----DKQTNTSDMLDFAVDYIKDLQ 164 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.176	113	163	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.85E-16	116	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.64E-10	117	166	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.0E-14	118	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-9	119	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.4E-12	119	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
SSRLKRQMSS SSGVKMLPRI AEVEPDTMDP GVLNESSDYP FGSWEQESSQ FIDNFTGLKR 60 ELNLQNGNTL GNQPPMLAHH LSLPKTSGEM AAIEKLLHCQ DSVPCKIRAK RGCATHPRSI 120 AERVRRTRIS ERMRKLQELV PHMDKQTNTS DMLDFAVDYI KDLQEQYKAL KDCRANCRCS 180 AMSGRT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024981535.1	1e-116	transcription factor bHLH130-like
Swissprot	Q66GR3	4e-66	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A2U1KC78	1e-137	A0A2U1KC78_ARTAN; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
STRING	XP_006490036.1	6e-72	(Citrus sinensis)
STRING	PGSC0003DMT400021062	8e-72	(Solanum tuberosum)
STRING	XP_006421491.1	5e-72	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	7e-64	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]