PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan017439

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

Protein Properties

Length: 266aa MW: 29485.4 Da PI: 8.5009

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41970757	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-1327	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.2	1.6e-23	130	231	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++++l++ Aan017439 130 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEKQQLLL 226 99***************************9445444.38********************************************..5688889 PP EEE-S CS B3 95 kvfrk 99 +++r+ Aan017439 227 GIRRA 231 **997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.35E-44	118	259	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.3E-42	122	245	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.28E-20	129	221	No hit	No description
Pfam	PF02362	1.3E-21	130	231	IPR003340	B3 DNA binding domain
SMART	SM01019	6.1E-23	130	232	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.97	130	232	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MKNNNNGSTA NPNEDKNNNQ KIINPELWQA CAGPLVNLPP AGTHVVYFPQ GHSEQVAASM 60 KKDVDAQIPN YPNLQSKLLC ILHSVTLHAD TETDEVYAQM TLQPVPSFDR EALLRSDLLM 120 KAHKPQTEFF CKTLTASDTS THGGFSVPRR AAEKIFPPLD FSMQPPAQEL VARDLHDNVW 180 TFRHIYRGQP KRHLLTTGWS LFVSGKRLFA GDSVLFIRDE KQQLLLGIRR ANRQPANLSS 240 SVLSSDSMHI GILAAAAHAA ANNSPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	1e-122	14	266	41	294	Auxin response factor 5
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269\|PubMed:17408882}.

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023770043.1	1e-162	auxin response factor 19-like
Swissprot	Q0D9R7	1e-139	ARFS_ORYSJ; Auxin response factor 19
TrEMBL	A0A2U1M5P0	0.0	A0A2U1M5P0_ARTAN; Auxin response factor
STRING	EMJ26624	1e-151	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	1e-129	auxin response factor 19

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang S, et al. The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1. Plant Cell Environ., 2015. 38(4): p. 638-54 [PMID:24995795]