PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan017456

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

G2-like

Protein Properties

Length: 276aa MW: 30417.1 Da PI: 9.4639

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41951837	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-75483	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.5	7e-34	41	95	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Aan017456 41 KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 95 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.801	38	98	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-32	38	96	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.15E-16	40	96	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.4E-24	41	96	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-8	43	93	IPR001005	SANT/Myb domain
Pfam	PF14379	5.7E-22	138	177	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MNSLHHHHHP HDHHQRSPNM CGSTPGTIQG DSGLVLTTDP KPRLRWTVEL HERFVDAVAQ 60 LGGPDKATPK TIMRVMGVKG LTLYHLKSHL QKFRLGKQPH KEFNDHSIKD SERASALELQ 120 RNSSASSSGM MGRSMNEMQI EVQRRLHEQL EVQRHLQLRI EAQGKYMQTI LEKACQTLAG 180 DQSMAVAAAA GYNNNNNKMV GTTSGIGMNM NMSININAST SSSGHLDQPP TAGHSHRMLL 240 PGDHVPSAIK DFGSLNFPSF QDLNLYGTSP SPSPPX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-18	41	97	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-18	41	97	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-18	41	97	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-18	41	97	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Specifically expressed in the developing protophloem sieve elements soon after the phloem-specific cell divisions have taken place. Also found in the companion cells and metaphloem sieve elements. May not be necessary for the initial steps of protophloem differentiation. {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061}.
Uniprot	TISSUE SPECIFICITY: Expressed in shoots and roots, specifically in the developing protophloem sieve elements (PubMed:14614507). Detected in phloem and/or cambium (PubMed:15923329). Expressed in the phloem tissues of various organs, including leaves and cotyledons, during vegetative growth (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:15923329, ECO:0000269\|PubMed:26239308}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024960044.1	1e-152	myb family transcription factor APL-like isoform X1
Refseq	XP_024960045.1	1e-153	myb family transcription factor APL-like isoform X2
Swissprot	Q9SAK5	4e-95	APL_ARATH; Myb family transcription factor APL
TrEMBL	A0A2U1KLM9	0.0	A0A2U1KLM9_ARTAN; Homeodomain-like superfamily protein
STRING	XP_009340543.1	1e-105	(Pyrus x bretschneideri)
STRING	EMJ12662	1e-105	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	4e-86	G2-like family protein

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]