PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan017658
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family HSF
Protein Properties Length: 280aa    MW: 31407.2 Da    PI: 6.0656
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41946567PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-114284PU_unrefplantGDBView CDS
PUT-183a-Artemisia_annua-114285PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.21.7e-35101012102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y++++d+ ++e++sw+e+gn fvv+++ +fa+++Lp+ Fkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk+g+kell +i+
     Aan017658  10 FLLKTYQMVDDPMTNEIVSWNESGNGFVVWKTADFARDLLPNSFKHNNFSSFVRQLNTYGFHKTLPDK---------WEFANEYFKRGRKELLIEIN 97 
                   9***************************************************************9999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
     Aan017658  98 RRKT 101
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.9E-37394IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.3E-32599IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-54699IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-181033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.4E-301099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-184860IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-186173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MVHRSSPAPF LLKTYQMVDD PMTNEIVSWN ESGNGFVVWK TADFARDLLP NSFKHNNFSS  60
FVRQLNTYGF HKTLPDKWEF ANEYFKRGRK ELLIEINRRK TVTPPKGKSE GGEGGSSSGD  120
DLGSSSTSSQ DSKNPGSVIL PMVEKIENLS DENVKLKEEK QVLTSELAHA KKQCDDLVAF  180
LTQCVKVAPN QISRIMNGDI AVDDKGISGH DTDGDEDADN DGECFRLFGV LLKNGKKKRC  240
QNDENETPGA EMKRMKLQGD IPWMNNKLYS VTEQYNKACN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A6e-215992106HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A6e-215992106HEAT-SHOCK TRANSCRIPTION FACTOR
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023737719.11e-140heat shock factor protein HSF24-like
SwissprotP223358e-92HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A2U1LIP00.0A0A2U1LIP0_ARTAN; Heat shock factor (HSF)-type, DNA-binding
STRINGVIT_07s0031g00670.t015e-97(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.13e-69heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]