PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan017782
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family GATA
Protein Properties Length: 171aa    MW: 18480 Da    PI: 9.4639
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-91027PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.41.9e-184074135
       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
               C+ Cgt+kTplWR gp g+k+LCnaCG++ rk+++
  Aan017782 40 CADCGTSKTPLWRGGPAGPKSLCNACGIRSRKRRR 74
               ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.4E-133490IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.37E-123875No hitNo description
CDDcd002029.04E-123974No hitNo description
Gene3DG3DSA:3.30.50.103.2E-153973IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034404065IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.074070IPR000679Zinc finger, GATA-type
PfamPF003202.7E-164074IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MGDVSDKGSE CEDMMMMMNS PERCAGSISS DGGDFFIKTC ADCGTSKTPL WRGGPAGPKS  60
LCNACGIRSR KRRRALLGVS TNDXLKNQRK PHPTITTTTT SGGDSQNSGL TTICKSDYMG  120
DLCLKKRIMA LGSEVLVQRP RSKVTKHRRK PSEEEKAAYL LMAISCGSVF A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16973RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024986422.12e-72GATA transcription factor 16-like
SwissprotQ9FJ103e-31GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A2U1PAN05e-97A0A2U1PAN0_ARTAN; Uncharacterized protein
STRINGMigut.G00106.1.p3e-47(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.19e-33GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]