PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan017862

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

C3H

Protein Properties

Length: 361aa MW: 40977.2 Da PI: 5.4551

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S55061398	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-155396	PU_unref	plantGDB	View CDS
PUT-183a-Artemisia_annua-155397	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18	5.2e-06	89	112	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC ff + G+C G +CkF+H+ Aan017862 89 KSILCEFFKA-GQCAKGFKCKFSHD 112 66797777.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	4.84E-6	87	112	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-4	87	113	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.159	87	114	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-4	89	113	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.784	158	196	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.9	158	195	IPR000571	Zinc finger, CCCH-type
Pfam	PF16543	8.0E-17	215	294	IPR032378	ZC3H15/TMA46 family, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MPPNKSKADV AKKQKVVEDK TFGLKNKNKS KNVQKYVQQI QQSAVPKPDP SKLAAKKKKE 60 EEKAREKELN EIFKIAVVQP KVPVGVDPKS ILCEFFKAGQ CAKGFKCKFS HDLNVQRKGE 120 KIDIFSDKHD DEGTMEDWDL ETLAKVVESK GKEYNQNKPT DIVCKHFLDA VEKKQYGWFW 180 VCPNGNKECH YRHALPPGYI LKSQMKALLE EEANKLAIED EIEDQRAKVK TTTPMTTDLF 240 MGWKKKKMDE KEAGMAALRA ERAKNDRMSG RELFLADASL FVDDAEAYEK YHREEEPDNS 300 NQKAQESSST SGPSTSTSVA AVSEEGNFDI DDDDDDLDMD ELNELEASLS RTSIQIKEPE 360 K

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MPPNKSKADV AKKQKVVEDK TFGLKNKNKS KNVQKYVQQI QQSAVPKPDP SKLAAKKKKE  60
EEKAREKELN EIFKIAVVQP KVPVGVDPKS ILCEFFKAGQ CAKGFKCKFS HDLNVQRKGE  120
KIDIFSDKHD DEGTMEDWDL ETLAKVVESK GKEYNQNKPT DIVCKHFLDA VEKKQYGWFW  180
VCPNGNKECH YRHALPPGYI LKSQMKALLE EEANKLAIED EIEDQRAKVK TTTPMTTDLF  240
MGWKKKKMDE KEAGMAALRA ERAKNDRMSG RELFLADASL FVDDAEAYEK YHREEEPDNS  300
NQKAQESSST SGPSTSTSVA AVSEEGNFDI DDDDDDLDMD ELNELEASLS RTSIQIKEPE  360
K

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021977023.1	0.0	zinc finger CCCH domain-containing protein 11-like
Swissprot	Q0JHZ2	0.0	C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBL	A0A251U453	0.0	A0A251U453_HELAN; Putative zinc finger C-x8-C-x5-C-x3-H type family protein
STRING	ERM95716	0.0	(Amborella trichopoda)
STRING	XP_008384304.1	0.0	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20280.1	1e-156	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]