PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan017872
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family Trihelix
Protein Properties Length: 601aa    MW: 66784.9 Da    PI: 5.0594
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55011720PU_unrefUnigeneView CDS
gnl|UG|Aan#S55143988PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-99239PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.28.3e-2751133186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                rW+kqe+laLi++r+em+ ++r+++lk+plW+ vs+k+ e gf+rs+k+C+ek+en+ k+++++keg+  + s+  + +++ dql+
  Aan017872  51 RWPKQETLALIRIRSEMDAAFRDSNLKGPLWDNVSRKLLELGFNRSAKKCREKFENVYKYHRRTKEGRTAK-SD--KIYRFSDQLQ 133
                8******************************************************************9985.33..3478878776 PP
2trihelix100.21.8e-31401486187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW+k e++aLi++r++++ +++++  k+plWee+s+ mr  g++r++k+Ckekwen+nk+ykk+ke++kkr se+s+tc+yfdql+a
  Aan017872 401 RWPKAEIKALITLRTQLDLKYQENIPKGPLWEEISALMRNIGYNRNAKRCKEKWENINKYYKKLKESNKKR-SENSKTCSYFDQLDA 486
                8*********************************************************************8.88899********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.21344108IPR017877Myb-like domain
SMARTSM007171.3E-448110IPR001005SANT/Myb domain
PfamPF138371.1E-1650133No hitNo description
CDDcd122036.03E-2550115No hitNo description
SMARTSM007174.0E-4398460IPR001005SANT/Myb domain
PROSITE profilePS500907.178400458IPR017877Myb-like domain
CDDcd122031.17E-27400465No hitNo description
Gene3DG3DSA:1.10.10.607.8E-4401458IPR009057Homeodomain-like
PfamPF138371.3E-21401487No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MEQQVAPPAP TTVNNNISGD GAATPQLQPP HINGGAAEMG DDGDRNSGGN RWPKQETLAL  60
IRIRSEMDAA FRDSNLKGPL WDNVSRKLLE LGFNRSAKKC REKFENVYKY HRRTKEGRTA  120
KSDKIYRFSD QLQALESNLS GAFAPAPISA ATPASVLVAM ANNVNATGSD QNNVSPISVA  180
APAVMAVPPP PVMNHKRTFP FSQPNMSGST NSASSSDTDD EPPRKKKKWE DFFGKLMKEV  240
IQKQEELQMR FLDTLERREK DRVAREEAWR AQEIVKMNQE YEMLVKERSV VAAKDAAIIT  300
FLQKLTENNS DGLKLITNEA KAKLTELMAP PTPIPMPSVS TIQVLPQQQI QQTPPPPPPA  360
KQTPRPPQPE VTPAVLPPQV AQNLGSGGSS GENMLSPSPS RWPKAEIKAL ITLRTQLDLK  420
YQENIPKGPL WEEISALMRN IGYNRNAKRC KEKWENINKY YKKLKESNKK RSENSKTCSY  480
FDQLDAIYRE KSNAIIVAQP ENQWPPATVV QENTPAPAVQ QPVSTTDTAG LGVRPEQQWR  540
LPTVVKETPQ VDDQGSDNVD DYDDIDDDGD DDEDDDDNED KDDESGGYEI VANKMSSMAA  600
I
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024972998.10.0trihelix transcription factor GT-2-like
TrEMBLA0A2U1Q3190.0A0A2U1Q319_ARTAN; Trihelix protein
STRINGSolyc12g056510.1.11e-150(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-36Trihelix family protein