PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan017946
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family ARF
Protein Properties Length: 437aa    MW: 48823.6 Da    PI: 7.8676
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-330160994PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3781e-2448148198
                EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                f+kvlt sd++++g +++ +k+a+e+     + +++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++el+v+
  Aan017946  48 FCKVLTASDTSTHGGFSVLRKHANEClppldMTEPTPTQELVAKDLHGIEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGDNGELHVG 145
                99****************************9555566679************************************************..3489999*** PP

                EE- CS
         B3  96 vfr 98 
                v+r
  Aan017946 146 VRR 148
                *98 PP
2Auxin_resp97.91.5e-32174253183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha+st++ F v+Y+Pr+  s+F++ ++k+ +++++ ++vGmRf m+fe+eds+err++Gt+vgv+dl+  +W+ S+WrsLk
   Aan017946 174 ASHALSTQTRFLVYYKPRT--SQFIIGLNKYIESINNGFTVGMRFNMRFEGEDSPERRFTGTIVGVEDLSG-QWECSNWRSLK 253
                 789***************6..9**********************************************665.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.45E-3938177IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.0E-4041163IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-2247148No hitNo description
PROSITE profilePS5086312.36548150IPR003340B3 DNA binding domain
PfamPF023621.4E-2248148IPR003340B3 DNA binding domain
SMARTSM010192.1E-2448150IPR003340B3 DNA binding domain
PfamPF065073.9E-30174253IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
VVHTQLLAEQ DTDEVYAQIT LLPEQDQSDP TSPDKCVAEP PRPTDYSFCK VLTASDTSTH  60
GGFSVLRKHA NECLPPLDMT EPTPTQELVA KDLHGIEWRF KHIFRGQPRR HLLTTGWSTF  120
VTSKRLVAGD SFVFLRGDNG ELHVGVRRVA HQHNSMPSSV ISSRSMRLGV LATASHALST  180
QTRFLVYYKP RTSQFIIGLN KYIESINNGF TVGMRFNMRF EGEDSPERRF TGTIVGVEDL  240
SGQWECSNWR SLKVQWDEPT SIVRPERVSP WEIEAYASPI PTSLVQPVTP KNKRPRPPTN  300
IPILEPPCST VSAVWNPTHE QTENGEREDR KGVSGWSVHS NMAQESTKLT KDSTNNPVDL  360
KKSESVSSCR LFGFDLKVAP KGDNTVSEVS PSAERHELAG NSDQKSNPPS KDCIDVQKKQ  420
STLSRSRTKV QMQGVAX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-135127477353Auxin response factor 1
4ldw_A1e-135127477353Auxin response factor 1
4ldw_B1e-135127477353Auxin response factor 1
4ldx_A1e-135127477353Auxin response factor 1
4ldx_B1e-135127477353Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292296KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024985224.10.0auxin response factor 18-like isoform X1
SwissprotQ9ZPY61e-159ARFK_ARATH; Auxin response factor 11
TrEMBLA0A2U1PAM40.0A0A2U1PAM4_ARTAN; Auxin response factor
STRINGGorai.003G078000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.21e-153auxin response factor 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]