PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan018070
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family HSF
Protein Properties Length: 333aa    MW: 38682.9 Da    PI: 4.6514
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41947204PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-43541PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.88.2e-34461372102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+++++ed++ +e++sws++ nsfvv+d+ +f++ +LpkyFkhsnf+SF+RQLn+YgFkkv+ ++         weF+++ F  g+++ll++i+
     Aan018070  46 FLTKIFDMVEDPTSDEVVSWSKTRNSFVVWDSYRFSTALLPKYFKHSNFSSFIRQLNTYGFKKVDPDR---------WEFANEGFLGGQRHLLKTIR 133
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+++
     Aan018070 134 RRRN 137
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3639130IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.17E-3242135IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.7E-5742135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-184669IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.7E-3046135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-188496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-1897109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
XGSNTNTKTK TMQTVKEEEV TFISSSSSSS SPRPKEGLNE VGPPPFLTKI FDMVEDPTSD  60
EVVSWSKTRN SFVVWDSYRF STALLPKYFK HSNFSSFIRQ LNTYGFKKVD PDRWEFANEG  120
FLGGQRHLLK TIRRRRNVAQ SVQPKQEYGP CIEVGQYGIE EELEVLKRDR SVLMTEIVRL  180
RQLQQHSKDQ LIAMENQLKA TERKQQNMMG FLAKAFSNPE FLQKYMDKYA NKEQEHIEIG  240
RKRRLTMTPS VENLQENIDP FITAPFEEES SSNVGLVEDE SHDNLWEELL NVDVPTERPP  300
DDFLDDLDGQ QLDWDEDLQE LVDQMEYLRS SNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-243713517129Heat shock factor protein 1
5d5v_B6e-243713517129Heat shock factor protein 1
5d5v_D6e-243713517129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022001701.10.0heat shock factor protein HSF30-like isoform X1
SwissprotP411521e-121HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A2U1NG190.0A0A2U1NG19_ARTAN; Heat shock factor (HSF)-type, DNA-binding
STRINGGorai.013G220400.11e-127(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-106heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]