PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan018121

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

GRAS

Protein Properties

Length: 565aa MW: 62778.9 Da PI: 5.8788

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41932375	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-70362	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	305.5	1.3e-93	200	564	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlsel...aspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 ++L+++Ae + sg+++ aq +Larl+++ as ++ +p+qR+a+yf+eAL+ l++ + ++ p + t++ n ++ a+k+fsevsPi++f ++t Aan018121 200 DQLFAAAELMLSGNFSHAQGILARLNHQfssASAQAsnKPFQRAAFYFKEALQMNLQS-LMSNSNLNPNRITPQFNGMFKMGAYKMFSEVSPIIQFMNFT 298 79***********************975533333346**************9.44444445666666678******************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 Nq+I ea+ ++ +HiiDfdi+ G+QW++++q+L +R+ +g sl+iT+++sp++++ el ++e+L++fA+e+g++fe +v+ ++++++++++ Aan018121 299 SNQTIIEALGDANNIHIIDFDIGFGAQWASFIQELPNRNkasGGGCSLKITAFASPSTHHPIELGLMHENLSQFAQEIGISFELEVV---NFDSFDPRSF 395 **********************************98777778************************************8...9***** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 +v+ +Ea+aV+l + +++ l s+++++L++vk+lsP++vv ++ +++++ +F + +l+ l+yy +l+ds+++ s++ +k+E++l++++i Aan018121 396 SVSGNEAIAVSLPIWSASTH-----L-SAIPSILHFVKQLSPRIVVSLDRGCERTDLPFPHYLLQGLQYYEVLLDSFDSA-NIVSDASNKIEKFLFQPQI 488 *********9777776.....3.33678*****************************************665.4689*********** PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + +v + + e + +W++ +++ G++pv +s++a++qa++l+++++++g+ +e++ +slvl+W++r+L++vSaW+ Aan018121 489 ERMVLGKLQF----PEPMPHWKSLFTAGGYSPVLFSNFAETQAECLVKRMQVQGFCIEKRLASLVLCWQSRELMTVSAWK 564 998887....9**************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	38.052	172	544	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.4E-91	200	564	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence Send to blast
XTTTAPPLGV TTNHHHHILQ KWPENVPQEM GFSGYVANNC LVGGGGGCEL QPIPAVFEDD 60 WENLLTQDQS LRWISGDFED SSLSLQQLLQ SNNQIDQNVA SVENQLNAAF NAQNANLLPF 120 SDLGFQKDAI FDAGFQKDQI LNAGLSKDLI LNQGFQKNGV LKSVVVVGAK QELVQSVQSG 180 IVLPHNNNHH QHHQYQVMCD QLFAAAELML SGNFSHAQGI LARLNHQFSS ASAQASNKPF 240 QRAAFYFKEA LQMNLQSLMS NSNLNPNRIT PQFNGMFKMG AYKMFSEVSP IIQFMNFTSN 300 QTIIEALGDA NNIHIIDFDI GFGAQWASFI QELPNRNKAS GGGCSLKITA FASPSTHHPI 360 ELGLMHENLS QFAQEIGISF ELEVVNFDSF DPRSFSVSGN EAIAVSLPIW SASTHLSAIP 420 SILHFVKQLS PRIVVSLDRG CERTDLPFPH YLLQGLQYYE VLLDSFDSAN IVSDASNKIE 480 KFLFQPQIER MVLGKLQFPE PMPHWKSLFT AGGYSPVLFS NFAETQAECL VKRMQVQGFC 540 IEKRLASLVL CWQSRELMTV SAWKC

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence Send to blast

XTTTAPPLGV TTNHHHHILQ KWPENVPQEM GFSGYVANNC LVGGGGGCEL QPIPAVFEDD  60
WENLLTQDQS LRWISGDFED SSLSLQQLLQ SNNQIDQNVA SVENQLNAAF NAQNANLLPF  120
SDLGFQKDAI FDAGFQKDQI LNAGLSKDLI LNQGFQKNGV LKSVVVVGAK QELVQSVQSG  180
IVLPHNNNHH QHHQYQVMCD QLFAAAELML SGNFSHAQGI LARLNHQFSS ASAQASNKPF  240
QRAAFYFKEA LQMNLQSLMS NSNLNPNRIT PQFNGMFKMG AYKMFSEVSP IIQFMNFTSN  300
QTIIEALGDA NNIHIIDFDI GFGAQWASFI QELPNRNKAS GGGCSLKITA FASPSTHHPI  360
ELGLMHENLS QFAQEIGISF ELEVVNFDSF DPRSFSVSGN EAIAVSLPIW SASTHLSAIP  420
SILHFVKQLS PRIVVSLDRG CERTDLPFPH YLLQGLQYYE VLLDSFDSAN IVSDASNKIE  480
KFLFQPQIER MVLGKLQFPE PMPHWKSLFT AGGYSPVLFS NFAETQAECL VKRMQVQGFC  540
IEKRLASLVL CWQSRELMTV SAWKC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-30	231	564	31	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022000427.1	0.0	scarecrow-like protein 6
TrEMBL	A0A2U1KIE1	0.0	A0A2U1KIE1_ARTAN; Transcription factor GRAS
STRING	Lus10004353	1e-159	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-102	GRAS family protein