PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan018266

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

MYB_related

Protein Properties

Length: 226aa MW: 24351.8 Da PI: 9.3049

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41959231	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-144570	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.3	1.8e-13	76	120	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + +R++ q+ s+ qky Aan018266 76 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRSPPQVASHAQKY 120 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	5.487	1	20	IPR017884	SANT domain
PROSITE profile	PS51294	17.217	69	125	IPR017930	Myb domain
SuperFamily	SSF46689	1.12E-15	71	126	IPR009057	Homeodomain-like
SMART	SM00717	5.2E-11	73	123	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	7.9E-17	73	124	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	4.1E-10	74	119	IPR009057	Homeodomain-like
Pfam	PF00249	3.5E-11	76	120	IPR001005	SANT/Myb domain
CDD	cd00167	4.12E-10	76	121	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
PGKTAEEVKH HYELLVDDLD RIESGVVPLP CYTASSDDSG SRGGDDGTSK KSGNLRHHSS 60 EGKASKADQE RRKGVAWTED EHRLFLLGLE KYGKGDWRSI SRNFVVTRSP PQVASHAQKY 120 FIRQNSLNRD RRRTSIHDIT SVNNGDTSSP ITGQTNASPA GKSSNQPPHA TSDGGTTVGL 180 PLAVGTPVNI TPQSHMAYGI IAPGHLGPMT YPGPMAYPTS NTSSHR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269\|PubMed:26243618}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024994822.1	1e-113	transcription factor SRM1 isoform X1
Refseq	XP_024994823.1	1e-113	transcription factor SRM1 isoform X1
Refseq	XP_024994824.1	1e-113	transcription factor SRM1 isoform X1
Swissprot	Q9FNN6	3e-77	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A2U1PWH8	1e-163	A0A2U1PWH8_ARTAN; Homeodomain-like transcriptional regulator
STRING	XP_009613368.1	4e-92	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	5e-73	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]