PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan018298

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

HD-ZIP

Protein Properties

Length: 254aa MW: 29374.9 Da PI: 8.8434

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S55198448	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-236160994	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.1	5.4e-17	81	133	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++t+eq++ Le+ F +++++ e + +L+++lg++ rq+ +W+qN+Ra++k+ Aan018298 81 KRLTEEQVRLLESSFDSSKKLEPELKHQLSRQLGIPPRQIAIWYQNKRARWKN 133 468************************************************95 PP
2	HD-ZIP_I/II	105.8	3.4e-34	80	170	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +rl++eqv+lLE+sF++++kLepe K++l+r+Lg+ prq+a+W+qn+RAR+k++ lE+dy++L+ +++a e+++L+kev++Lr+el++ Aan018298 80 SKRLTEEQVRLLESSFDSSKKLEPELKHQLSRQLGIPPRQIAIWYQNKRARWKNQSLEHDYNMLQLQLEATLFETRQLQKEVDQLRAELNK 170 58*************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.856	74	134	IPR001356	Homeobox domain
SMART	SM00389	2.5E-15	74	138	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.64E-17	74	143	IPR009057	Homeodomain-like
CDD	cd00086	5.82E-13	77	135	No hit	No description
Pfam	PF00046	2.5E-14	81	133	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.6E-19	82	142	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	109	132	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MAFFILSAAA CSVERAAAKI SGCRYHLQMR LQGQGQPGHV PENTDKETPN HQSNQNNHKS 60 PIMNHSTYHN QKPSQRKHTS KRLTEEQVRL LESSFDSSKK LEPELKHQLS RQLGIPPRQI 120 AIWYQNKRAR WKNQSLEHDY NMLQLQLEAT LFETRQLQKE VDQLRAELNK VKAEQARYHK 180 YYNNNNNNHR PLMDSSFSIC GDQEGGSSSR SLEDDMNNNI YCFGQQVFEV EEMYATASLM 240 GSDLGLFASQ KKLF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023771289.1	3e-88	homeobox-leucine zipper protein ATHB-52-like
TrEMBL	A0A2U1L7L7	1e-129	A0A2U1L7L7_ARTAN; Helix-turn-helix motif-containing protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	6e-27	homeobox protein 52