PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan018299

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

SBP

Protein Properties

Length: 406aa MW: 45068.1 Da PI: 9.5708

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-100274	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.3	1.2e-39	85	162	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adl+ ak+yhrrhkv + hska+++lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+++ Aan018299 85 VCQVDDCQADLTGAKDYHRRHKVWNSHSKATKALVGNVMQRFCQQCSRFHTLEEFDEGKRSCRRRLAGHNRRRRKTHP 162 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.4E-33	78	147	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.428	83	160	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.1E-36	84	164	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.6E-28	86	159	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
XSAYLRVLRG SRLCLIVRLR VLMKGRGNWK KRRRVVVLDD EDEVGGLNLN LGGRVYPIPE 60 DESERWEGKS GKKSKVGGGS SNRPVCQVDD CQADLTGAKD YHRRHKVWNS HSKATKALVG 120 NVMQRFCQQC SRFHTLEEFD EGKRSCRRRL AGHNRRRRKT HPENQTNGVS LNDERTSSYL 180 LVSLLRILSS AQSNGSEPNK DQDLLAHLLR NLASLAGTVT EKNSSGSQSL QDAGTSVATP 240 EKEAMQPVRQ TVNPSGSETM HRGTLQTAAP CQIAFPSNNK APNEVGKMKL NNIDLNMVYD 300 DSQDCGFETP ENIDNVPLWL RHPQKSSPPQ TSGNSGSTAT QSPSSSSGEA QSRTDRIVFK 360 LFGRDPNELP LVLRNQILDW LLNSPTEIEG YIRPGCIILA VYLSSX

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

XSAYLRVLRG SRLCLIVRLR VLMKGRGNWK KRRRVVVLDD EDEVGGLNLN LGGRVYPIPE  60
DESERWEGKS GKKSKVGGGS SNRPVCQVDD CQADLTGAKD YHRRHKVWNS HSKATKALVG  120
NVMQRFCQQC SRFHTLEEFD EGKRSCRRRL AGHNRRRRKT HPENQTNGVS LNDERTSSYL  180
LVSLLRILSS AQSNGSEPNK DQDLLAHLLR NLASLAGTVT EKNSSGSQSL QDAGTSVATP  240
EKEAMQPVRQ TVNPSGSETM HRGTLQTAAP CQIAFPSNNK APNEVGKMKL NNIDLNMVYD  300
DSQDCGFETP ENIDNVPLWL RHPQKSSPPQ TSGNSGSTAT QSPSSSSGEA QSRTDRIVFK  360
LFGRDPNELP LVLRNQILDW LLNSPTEIEG YIRPGCIILA VYLSSX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	8e-31	79	159	4	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	30	34	KRRRV

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during plant development. {ECO:0000269\|PubMed:10524240}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269\|PubMed:16554053}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022038482.1	0.0	squamosa promoter-binding-like protein 1
Swissprot	Q9S7P5	5e-96	SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBL	A0A2U1PTF8	0.0	A0A2U1PTF8_ARTAN; SBP-like protein
STRING	Solyc05g053240.2.1	1e-139	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	3e-69	squamosa promoter-binding protein-like 12

Publications ? help Back to Top
Jung S, et al. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. BMC Genomics, 2006. 7: p. 81 [PMID:16615871] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]