PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan018336

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

TCP

Protein Properties

Length: 195aa MW: 20669.6 Da PI: 6.2904

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-632160996	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	69.7	9.3e-22	2	57	29	81
TCP 29 aarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssss 81 aar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ a+s+ s Aan018336 2 AARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALaaaGAVSHGLS 57 89***********************************9999966633222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	18.616	1	35	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.7E-15	2	77	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
XAARIFQLTR ELGHKSDGET IQWLLQQAEP SIIAATGTGT IPASALAAAG AVSHGLSISA 60 GLQHKLDELG SSNNNSNISG ACRTTWPMMT RPISHMANPM WSPTATPVSG FGYQSPSSSS 120 VSNLEIDGSN YLQKIAFSGY DLPGSNMGQM SFSSILGNHD HSQQQQQQQQ QHPGLELGLS 180 QDAHIGVLNQ QALNQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021982451.1	4e-81	transcription factor TCP20-like
Swissprot	Q9LSD5	3e-37	TCP20_ARATH; Transcription factor TCP20
TrEMBL	A0A2U1MHB8	1e-106	A0A2U1MHB8_ARTAN; TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20
STRING	XP_007161676.1	2e-65	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	8e-33	TCP family protein

Publications ? help Back to Top
Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]