PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan018360
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family MYB
Protein Properties Length: 120aa    MW: 13876.8 Da    PI: 10.2626
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-674160991PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.53e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv +++ +G g+W++ ++  g++R++k+c++rw +yl
        Aan018360 14 KGAWTKEEDDRLVTYINAHGEGSWRSLPKSAGLNRCGKSCRLRWINYL 61
                     79********************************************97 PP
2Myb_DNA-binding57.62.8e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++Ed+l+v +++ lG++ W+ Ia++++ gRt++++k++w+++
        Aan018360  67 RGNFTPQEDQLIVSLHAVLGNK-WSMIASRLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.019961IPR017930Myb domain
SuperFamilySSF466891.45E-3113108IPR009057Homeodomain-like
SMARTSM007171.3E-131363IPR001005SANT/Myb domain
PfamPF002499.9E-171461IPR001005SANT/Myb domain
CDDcd001678.40E-101661No hitNo description
PROSITE profilePS5129427.56162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2865117IPR009057Homeodomain-like
SMARTSM007172.7E-1666114IPR001005SANT/Myb domain
PfamPF002494.2E-1667111IPR001005SANT/Myb domain
CDDcd001673.41E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MVRSPCCEKD HTNKGAWTKE EDDRLVTYIN AHGEGSWRSL PKSAGLNRCG KSCRLRWINY  60
LRPDLKRGNF TPQEDQLIVS LHAVLGNKWS MIASRLPGRT DNEIKNYWNT HIKRKLVANN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30141167108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots, and, to a lower extent, in stems, flower buds, and siliques. {ECO:0000269|PubMed:9839469}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light, UV, cold, drought, ethylene, jasmonic acid (JA), salicylic acid (SA), abscisic acid (ABA), cadmium (CdCl(2)), high salt (NaCl), and cytokinins. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023751040.12e-83myb-related protein 308-like
RefseqXP_024983269.15e-83transcription factor MYB8-like
SwissprotO496084e-72MYB32_ARATH; Transcription factor MYB32
TrEMBLA0A2U1LUQ13e-85A0A2U1LUQ1_ARTAN; Myb domain protein 6
TrEMBLA0A2U1QKA43e-85A0A2U1QKA4_ARTAN; Myb domain protein 6
STRINGXP_010675151.12e-71(Beta vulgaris)
STRINGSi015081m5e-72(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34990.12e-74myb domain protein 32
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Lotkowska ME, et al.
    The Arabidopsis Transcription Factor MYB112 Promotes Anthocyanin Formation during Salinity and under High Light Stress.
    Plant Physiol., 2015. 169(3): p. 1862-80
    [PMID:26378103]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]