PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan018439

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

CO-like

Protein Properties

Length: 375aa MW: 41861.8 Da PI: 6.6857

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-73894	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25.7	2.4e-08	22	56	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkgHtv 39 + C+++++ + l+C+++ +lC C +++H +Ht+ Aan018439 22 KSCDTCKNAVALLYCRKDTAYLCLACDVKIH-SHTR 56 68****************************7.6553 PP
2	zf-B_box	27.6	5.9e-09	60	105	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC +C +H+ H++vp+ Aan018439 60 VWMCEVCEQAPASVTCKADAAALCVTCDRDIHSAnplsrrHDRVPV 105 689*****************************66899999999986 PP
3	CCT	71	3e-24	293	336	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Aan018439 293 REARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 336 9*****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	1.6E-8	19	62	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.168	19	62	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.2E-6	21	58	IPR000315	B-box-type zinc finger
CDD	cd00021	5.68E-8	24	62	No hit	No description
PROSITE profile	PS50119	10.921	58	105	IPR000315	B-box-type zinc finger
Pfam	PF00643	8.3E-7	60	105	IPR000315	B-box-type zinc finger
CDD	cd00021	6.44E-9	61	105	No hit	No description
SMART	SM00336	5.4E-10	63	105	IPR000315	B-box-type zinc finger
PROSITE profile	PS51017	16.896	293	335	IPR010402	CCT domain
Pfam	PF06203	2.5E-18	293	335	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MRMVDTGGAV KCFPVGWNVP AKSCDTCKNA VALLYCRKDT AYLCLACDVK IHSHTRHERV 60 WMCEVCEQAP ASVTCKADAA ALCVTCDRDI HSANPLSRRH DRVPVVPFYD CADILAKSAA 120 CTFLDHNSNG NSNSDELTSS ITNDDVINWG IAPETIDIDV KFPCDESPDI KSIEMFFPES 180 DHLLDFDFPA QTDVKIHSHF HDSINDSVVP FQLSPPANRY EIDFTRSNIK SYNKNSYLTQ 240 SMSHSVSSSS IDAGIVPEGN SMSEISHPFA LHANNNSDLS ASQAPTQLSG SDREARVMRY 300 REKRKNRKFE KTIRYASRKA YAETRPRIKG RFAKRTDSEP EADRWLFTTT SSVGSKNSYG 360 LEVEYGVVPS YSRGL

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MRMVDTGGAV KCFPVGWNVP AKSCDTCKNA VALLYCRKDT AYLCLACDVK IHSHTRHERV  60
WMCEVCEQAP ASVTCKADAA ALCVTCDRDI HSANPLSRRH DRVPVVPFYD CADILAKSAA  120
CTFLDHNSNG NSNSDELTSS ITNDDVINWG IAPETIDIDV KFPCDESPDI KSIEMFFPES  180
DHLLDFDFPA QTDVKIHSHF HDSINDSVVP FQLSPPANRY EIDFTRSNIK SYNKNSYLTQ  240
SMSHSVSSSS IDAGIVPEGN SMSEISHPFA LHANNNSDLS ASQAPTQLSG SDREARVMRY  300
REKRKNRKFE KTIRYASRKA YAETRPRIKG RFAKRTDSEP EADRWLFTTT SSVGSKNSYG  360
LEVEYGVVPS YSRGL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023746758.1	0.0	zinc finger protein CONSTANS-LIKE 5-like
TrEMBL	A0A2U1MZT1	0.0	A0A2U1MZT1_ARTAN; CONSTANS-like 5
STRING	VIT_11s0052g01800.t01	1e-109	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	8e-95	CONSTANS-like 5