PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan018702

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

C3H

Protein Properties

Length: 531aa MW: 58039.1 Da PI: 4.5473

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S55043793	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-92683	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	41.1	3e-13	269	291	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C++++rtG Ck+G++CkF+H+ Aan018702 269 EDCSYYMRTGLCKFGSNCKFNHP 291 89********************9 PP
2	zf-CCCH	23.4	1e-07	319	339	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++f+ +G CkyG Ck++H Aan018702 319 ECKYFSSSGGCKYGKACKYSH 339 7******************** PP
3	zf-CCCH	38.8	1.5e-12	362	386	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G CkyG++C+F+H+ Aan018702 362 GEKECPYYMRNGSCKYGPNCRFNHP 386 7899********************9 PP
4	zf-CCCH	31.5	2.9e-10	501	527	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++++tG Cky +CkF+H++ Aan018702 501 PGQPDCSYYMKTGDCKYKVSCKFNHPR 527 5789*********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.2E-6	265	292	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.075	265	293	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-6	266	294	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-10	269	291	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.3E-5	271	290	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.925	314	342	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0015	315	341	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.24E-5	317	342	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.7E-6	319	339	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.3E-4	320	340	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.3E-7	360	387	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.577	360	388	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.35E-6	362	388	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.9E-10	362	386	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.2E-5	366	385	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.5E-4	500	527	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.225	500	528	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-7	502	527	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.33E-5	505	528	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.5E-4	506	527	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence Send to blast
MGTTLEPTQQ SDPSNENDHT LIQALSQELE TLVLAQDPLK EIRVLEEEDL DQKARVLEKD 60 EVLDMGFLKG GGKCEDLDDL SGKDGILKDG LEGKDGVLVE NGSANLENVS SGEIVSYGSY 120 GEKGVNVGYG EKGENVSSGE IVSYGSYGEK GENVDGGYAE NVSYGGYSEK GENVDYGGYN 180 EKGEDISYGG YGENVDGGYD GSYGVYGEKG KNFEHENVDG GGYDGNYGGY GGGWEEGGSG 240 NTNNVVDGDD DDDEGGIRSY HFPLRPDAED CSYYMRTGLC KFGSNCKFNH PLRKRTQGAK 300 VTRRQKDENF ERHGAQQIEC KYFSSSGGCK YGKACKYSHT KGKSALTPVL EYNFLGLPIR 360 PGEKECPYYM RNGSCKYGPN CRFNHPDPTT GGTDGPATYG NDGHLPLQTA PQPNMPSWSA 420 PRTPDPTAAY VPMMYSPPQN IPPPNSDWNG YQAPALPHVY PSSERGLPIP PAFYLNNPPA 480 DTNLYTHHQQ PMPVSDYPER PGQPDCSYYM KTGDCKYKVS CKFNHPRNRI X

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence Send to blast

MGTTLEPTQQ SDPSNENDHT LIQALSQELE TLVLAQDPLK EIRVLEEEDL DQKARVLEKD  60
EVLDMGFLKG GGKCEDLDDL SGKDGILKDG LEGKDGVLVE NGSANLENVS SGEIVSYGSY  120
GEKGVNVGYG EKGENVSSGE IVSYGSYGEK GENVDGGYAE NVSYGGYSEK GENVDYGGYN  180
EKGEDISYGG YGENVDGGYD GSYGVYGEKG KNFEHENVDG GGYDGNYGGY GGGWEEGGSG  240
NTNNVVDGDD DDDEGGIRSY HFPLRPDAED CSYYMRTGLC KFGSNCKFNH PLRKRTQGAK  300
VTRRQKDENF ERHGAQQIEC KYFSSSGGCK YGKACKYSHT KGKSALTPVL EYNFLGLPIR  360
PGEKECPYYM RNGSCKYGPN CRFNHPDPTT GGTDGPATYG NDGHLPLQTA PQPNMPSWSA  420
PRTPDPTAAY VPMMYSPPQN IPPPNSDWNG YQAPALPHVY PSSERGLPIP PAFYLNNPPA  480
DTNLYTHHQQ PMPVSDYPER PGQPDCSYYM KTGDCKYKVS CKFNHPRNRI X

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024970964.1	1e-156	zinc finger CCCH domain-containing protein 67-like isoform X2
Swissprot	Q9STM4	1e-91	C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBL	A0A2U1KWZ1	0.0	A0A2U1KWZ1_ARTAN; Zinc finger, CCCH-type
STRING	XP_009791086.1	1e-121	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	2e-83	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]