PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan018807
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family B3
Protein Properties Length: 336aa    MW: 38369.9 Da    PI: 8.108
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-276160988PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.32.5e-1787177199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                f k ++ps+vl s +l+lp kf+ +h   +e ++t++l desg++++ ++   k +  + l++GW++F  a++L +gD++ F+l++  +  l v ++r+
  Aan018807  87 FGKCMLPSNVLYSFWLILPSKFCVNHL--PEHDTTVILVDESGKEFKTNY--LKVR--HGLSAGWRGFTVAQRLLQGDILFFRLIEPCK--LQVNIVRR 177
                66999******************9994..34678****************..5554..55***********************997443..57877775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-2081176IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-1883176IPR015300DNA-binding pseudobarrel domain
CDDcd100172.20E-2285176No hitNo description
PfamPF023621.6E-1487177IPR003340B3 DNA binding domain
PROSITE profilePS5086311.92887178IPR003340B3 DNA binding domain
SMARTSM010191.3E-1587178IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDSNKQTFVE QDSEMMQNLS CEKEKKRKRV PKEPKDKQIM LDKPKRASGK GKRTKLCDIY  60
NDPEDQYMCM ERAATVLETL DEGLPKFGKC MLPSNVLYSF WLILPSKFCV NHLPEHDTTV  120
ILVDESGKEF KTNYLKVRHG LSAGWRGFTV AQRLLQGDIL FFRLIEPCKL QVNIVRRYDL  180
EAIEAADCLM EMHPRAKKVR VSNYFDSDKA GEPKKERRKC KKAKEEIEDE LKYQTPIPVQ  240
MTKGKRTKRS PKKFIARLSL DFCSNQGVTN EEDGERVSCV DQCGNSSDGL GSEVLQGSTS  300
EMTNQSQAEE DGCYKLNLGC HESTAERIFH SPTVTA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213221KKERRKCKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024968646.11e-169B3 domain-containing protein Os05g0481400-like isoform X1
TrEMBLA0A2U1LY880.0A0A2U1LY88_ARTAN; B3 DNA binding domain-containing protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-28B3 family protein