PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan018887

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

bHLH

Protein Properties

Length: 251aa MW: 27791.6 Da PI: 6.9566

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-384160996	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.3	5e-12	74	110	3	44
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiL 44 ++h+e+ErrRR+riN+ +++Lr++lP+ +K +Ka+ L Aan018887 74 KSHSEAERRRRERINNHLAKLRSILPST-----TKTDKASLL 110 79*************************9.....789998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.996	71	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-9	74	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-12	75	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.5E-12	75	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-7	77	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	1.37E-7	157	222	No hit	No description
Gene3D	G3DSA:3.30.70.260	9.6E-5	157	229	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
XLYHAMVACL NRRLPGGLQF AYEGNPSADH HLRLLSETLG HVVQPGSGPF GLQAEMSKMT 60 AQEIMDAKAL AASKSHSEAE RRRRERINNH LAKLRSILPS TTKTDKASLL AEEYNXLKEL 120 KRQTSIIAEQ SPVPTETDEL IIDNTSDEDG NLVIRASLCC EDRSDLLPDL IKTLKALHLR 180 TLKAEITTLG GRVKNVLFIT GDQDPNNNDS TTNYSINMIQ EAFKAVMEKT NGDHESTSGS 240 SKRQRTNNAL X

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	79	84	ERRRRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022021867.1	1e-143	transcription factor bHLH30-like
Refseq	XP_024994780.1	1e-143	transcription factor bHLH30-like
Swissprot	Q9S7Y1	7e-99	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A2U1LRD0	1e-149	A0A2U1LRD0_ARTAN; Myc-type, basic helix-loop-helix (BHLH) domain-containing protein
STRING	EMJ25459	1e-115	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	9e-94	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]