PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan018929

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

WRKY

Protein Properties

Length: 257aa MW: 28082.7 Da PI: 6.9663

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41962676	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-70736	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.3	3.2e-33	90	148	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+++d k v++tYeg+Hnh+ Aan018929 90 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSTGCTVRKHVERASHDLKSVITTYEGKHNHD 148 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-37	75	150	IPR003657	WRKY domain
SuperFamily	SSF118290	3.14E-29	82	150	IPR003657	WRKY domain
PROSITE profile	PS50811	38.503	85	150	IPR003657	WRKY domain
SMART	SM00774	1.7E-37	90	149	IPR003657	WRKY domain
Pfam	PF03106	1.8E-25	91	148	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
XSSTIVHQGQ NGTQFESSDA VDGSTTFSND EEEDDRATHG SVSLGYDGEG DESESKRRKV 60 EAYAAEVSGA SRAIREPRVV VQTTSEVDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTSTG 120 CTVRKHVERA SHDLKSVITT YEGKHNHDVP AARNSSHNNS QAQSIQPAQI QNPMARYERP 180 HFGQGFGPHG YGYGMNLPGP GLGQMAMAGL GPNQFLGQGM MMPKGEPKVE PVSDPGLNGS 240 SVYHHQMMNR MPLGPHM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-39	81	151	8	78	Probable WRKY transcription factor 4
2lex_A	5e-39	81	151	8	78	Probable WRKY transcription factor 4
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269\|PubMed:11722756, ECO:0000269\|PubMed:21316593}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269\|PubMed:21316593}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021978177.1	1e-140	probable WRKY transcription factor 2
Swissprot	Q9FG77	2e-83	WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBL	A0A2U1QPF3	0.0	A0A2U1QPF3_ARTAN; WRKY domain-containing protein
STRING	VIT_19s0015g01870.t01	1e-121	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	4e-80	WRKY DNA-binding protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ueda M, et al. Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote. Genes Dev., 2017. 31(6): p. 617-627 [PMID:28404632] Lei R, et al. Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function. Plant J., 2017. 91(6): p. 962-976 [PMID:28635025]