PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan018975

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

bHLH

Protein Properties

Length: 285aa MW: 31041.1 Da PI: 6.4043

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S54971795	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-103610	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.1	1e-10	167	215	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+el+P + +k Ka +L + ++Y++sLq Aan018975 167 NSHSLAERVRRERISERMKLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 215 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.53E-12	162	219	No hit	No description
SuperFamily	SSF47459	2.62E-17	162	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.574	164	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.9E-17	164	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.2E-8	167	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-10	170	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MGSSEGDTIA NNNDSEMGYQ YRGEMSSGTI FNNKSSSGSG NPFGSSWDPL ENFGAYPLYE 60 SDQSGGELVP KIGSFGSGNF SEMVNPFVPN SSPNSGEKRR AQFDPNMNGE RNDGSGDNTC 120 ENDEKKQRID SRSKQMGKQV KDNSDSGGAA AKDSYIHVRA KRGQATNSHS LAERVRRERI 180 SERMKLLQEL VPGCNKITGK AVMLDEIINY VQSLQQQVEF LSMKLATVNP EVNIDIDRLV 240 FKDIHHSRGS SSNPPFGFGP TLSSSHSYPH GSLPGISPTT TPLHP

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021977672.1	1e-144	transcription factor bHLH74 isoform X2
Swissprot	Q6NKN9	1e-57	BH074_ARATH; Transcription factor bHLH74
TrEMBL	A0A2U1PN29	0.0	A0A2U1PN29_ARTAN; Myc-type, basic helix-loop-helix (BHLH) domain-containing protein
TrEMBL	A0A2U1PN66	0.0	A0A2U1PN66_ARTAN; Myc-type, basic helix-loop-helix (BHLH) domain-containing protein
STRING	VIT_18s0001g08600.t01	2e-82	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	1e-59	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]