PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan019052
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family MYB
Protein Properties Length: 238aa    MW: 26723.5 Da    PI: 10.3611
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-680160997PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.4e-181462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd++lvd++++ Gg+ +W++ ++  g+ R++k+c++rw +yl
        Aan019052 14 RGPWTQEEDDILVDYINKNGGPgNWRSLPKLAGLLRCGKSCRLRWTNYL 62
                     89*******************************99************97 PP
2Myb_DNA-binding521.6e-1668113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++l +++++ lG++ W++Ia+ ++ gRt++++k+ w+++l
        Aan019052  68 RGPFSPEEEKLVIQLHAILGNR-WAAIAAQIP-GRTDNEIKNLWNTHL 113
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.375962IPR017930Myb domain
SuperFamilySSF466891.39E-2811109IPR009057Homeodomain-like
SMARTSM007171.6E-121364IPR001005SANT/Myb domain
PfamPF002494.7E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-221569IPR009057Homeodomain-like
CDDcd001671.55E-91662No hitNo description
PROSITE profilePS5129425.35563117IPR017930Myb domain
SMARTSM007176.4E-1567115IPR001005SANT/Myb domain
PfamPF002498.6E-1668113IPR001005SANT/Myb domain
CDDcd001671.35E-1170113No hitNo description
Gene3DG3DSA:1.10.10.603.8E-2670117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MVRAPCCEKA GLKRGPWTQE EDDILVDYIN KNGGPGNWRS LPKLAGLLRC GKSCRLRWTN  60
YLRPDIKRGP FSPEEEKLVI QLHAILGNRW AAIAAQIPGR TDNEIKNLWN THLRKRLLSI  120
GIDPQTHEPT SISSPLMGPL KRLPASPSTR HMAQWESARL EAEARLSLES SLLLAQSTPL  180
TPNKRTNTDY FLRIWHSEVG NSFRNIDIKR KKLICSSPAS QASVSGMTVE MGPKPEPX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-281211725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}.
UniprotTISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022002945.11e-151transcription factor MYB41-like
SwissprotQ9M2D91e-103MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A2U1MHH11e-157A0A2U1MHH1_ARTAN; Myb domain protein 17
STRINGXP_004510807.11e-110(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.14e-94myb domain protein 17