PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan019054

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

FAR1

Protein Properties

Length: 238aa MW: 27074.8 Da PI: 7.7013

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41955061	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-79939	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.4	9.9e-23	59	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY++YAk++GFsvr+++++ + + +t+r+f C + g+++ + +++++ +r+r+++r+gC+a +++ +++ +w+++ ++++HnHel+ Aan019054 59 EFYCSYAKQCGFSVRRNRTRGKdGVGKGVTRRDFICHRGGYPQFKPSEDVNVQRNRKSSRCGCQAYMRIVRRSdfnVPEWRIIGFSNDHNHELS 152 6**************99987456677****************9***************99998776789***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-19	59	152	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MHEITSMMEE TSENSTDLSA DDIGTIEEIP ENSILSRQGS VNLVPFIGQR FVSQEAAYEF 60 YCSYAKQCGF SVRRNRTRGK DGVGKGVTRR DFICHRGGYP QFKPSEDVNV QRNRKSSRCG 120 CQAYMRIVRR SDFNVPEWRI IGFSNDHNHE LSKSMDVQMP LPAYCAMSAD DKSRICMFAK 180 AGMSVRQMLR LMELEKGVKL GCLLFTEIDV RNLLQSFKTV DRDNDAIDLL KNVQGQEG

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024992108.1	1e-139	protein FAR1-RELATED SEQUENCE 11-like
Refseq	XP_024992109.1	1e-139	protein FAR1-RELATED SEQUENCE 11-like
Refseq	XP_024992110.1	1e-139	protein FAR1-RELATED SEQUENCE 11-like
Swissprot	Q9SY66	5e-77	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A2U1N709	1e-164	A0A2U1N709_ARTAN; Uncharacterized protein
STRING	VIT_07s0005g01120.t01	1e-135	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	2e-79	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]