PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan019121
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family HSF
Protein Properties Length: 206aa    MW: 24393.6 Da    PI: 9.7654
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55142848PU_refUnigeneView CDS
PUT-183a-Artemisia_annua-98495PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.31.6e-35101022103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F++k+y++++d++l++li+w +++nsf+v+d+ +f++++Lp yFkh+nf+SF+RQLn+YgF+kv+ ++         weF++++F +g+ +ll++i 
     Aan019121  10 FVMKTYQMVNDSSLDNLIRWGTSNNSFIVVDSLDFSQRLLPAYFKHNNFSSFIRQLNTYGFRKVDPDR---------WEFANEWFLRGQIHLLKNIG 97 
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   rk+++
     Aan019121  98 RKRQT 102
                   *9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.6E-53699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.26E-33799IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.1E-36899IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-291099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-181033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-184860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-186173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MESNDVIAPF VMKTYQMVND SSLDNLIRWG TSNNSFIVVD SLDFSQRLLP AYFKHNNFSS  60
FIRQLNTYGF RKVDPDRWEF ANEWFLRGQI HLLKNIGRKR QTSNRLKQTR LEDDEEEDMV  120
NEIARLKQEQ KLLEQELVNM NKRLEATERR PEQMMSLLCK VAEDPNILQR MMLEKGQRSK  180
RLVDRKKQRQ LITPQTVPSC STSSSX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-2319911120Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.31570.0leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024960526.11e-115heat stress transcription factor C-1-like
SwissprotQ9LV521e-81HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A2U1QCM61e-147A0A2U1QCM6_ARTAN; Winged helix-turn-helix DNA-binding domain, Heat shock transcription factor family
STRINGSolyc12g007070.1.12e-93(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.16e-77heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]