PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan019125
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family C2H2
Protein Properties Length: 200aa    MW: 21914.6 Da    PI: 6.6258
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41952970PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-24595PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00026183123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C + F ++  L  H++ H
  Aan019125 61 FSCNYCRRKFYSSQALGGHQNAH 83
               89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.43E-65989No hitNo description
PROSITE profilePS5015711.3856188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MEPPNKVFIT EEESESNNQL ASSTSEQIVT LDLTLGLSPE HATIEMSPTN PVSGSGASRV  60
FSCNYCRRKF YSSQALGGHQ NAHKRERTMA KRAMRMGMLS DRYASLASLP LHGSSFRALG  120
MEAHGSYHQA VVPQDTSFHL MRGGASFEQS YIGLPMFMED DEPELCWPGS FRQVDGVRGS  180
GMPPPPSRNS SATPDLTLKL
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021998782.15e-92zinc finger protein 4-like
RefseqXP_021998783.15e-92zinc finger protein 4-like
RefseqXP_021998784.15e-92zinc finger protein 4-like
RefseqXP_021998785.15e-92zinc finger protein 4-like
SwissprotQ392639e-42ZFP4_ARATH; Zinc finger protein 4
TrEMBLA0A2U1NAZ21e-147A0A2U1NAZ2_ARTAN; Zinc finger protein 7
STRINGPGSC0003DMT4000758951e-72(Solanum tuberosum)
STRINGPGSC0003DMT4000758981e-72(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.14e-44zinc finger protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]