PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan019155
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family HD-ZIP
Protein Properties Length: 171aa    MW: 20034.1 Da    PI: 10.3194
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-103090PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox42.79.3e-1433731757
               HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
   Homeobox 17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
               + F+ n++++ +++ +LA++lg++ rq+ +W+qN+Ra++++
  Aan019155 33 TSFNFNNKLDSTRKSQLAQELGVPARQIAIWYQNKRARWRN 73
               68*************************************95 PP
2HD-ZIP_I/II81.99.4e-2724110893
  HD-ZIP_I/II   8 keqvk.lLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                   eq+k +  +sF+ ++kL+++rK++la+eLg+ +rq+a+W+qn+RAR++++ lE+++++L++++++++++++rLe+eve+L+ el++
    Aan019155  24 IEQSKsSWKTSFNFNNKLDSTRKSQLAQELGVPARQIAIWYQNKRARWRNQSLETEHKTLQHQLERVSSDKNRLEREVERLQGELEK 110
                  46665246789***********************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.0E-81678IPR001356Homeobox domain
PfamPF000463.5E-113273IPR001356Homeobox domain
CDDcd000863.23E-93275No hitNo description
PROSITE profilePS5007112.6653274IPR001356Homeobox domain
SuperFamilySSF466892.91E-123282IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-143375IPR009057Homeodomain-like
PRINTSPR000312.3E-54554IPR000047Helix-turn-helix motif
PROSITE patternPS0002704972IPR017970Homeobox, conserved site
PRINTSPR000312.3E-55470IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
XPKKNKNPKK KRNKIKEKKD YNKIEQSKSS WKTSFNFNNK LDSTRKSQLA QELGVPARQI  60
AIWYQNKRAR WRNQSLETEH KTLQHQLERV SSDKNRLERE VERLQGELEK AKDMLVSSKT  120
INYASLPSFS SSCDEVASSS LLGDQDFYVS FDDHQFDHKS NGHDFFARSM S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1818KKKRNKIKEKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023746842.15e-91homeobox-leucine zipper protein ATHB-52-like
TrEMBLA0A2U1LC892e-98A0A2U1LC89_ARTAN; HD-ZIP protein
STRINGVIT_10s0003g00380.t015e-43(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.17e-25homeobox protein 52