PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan019478

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

bHLH

Protein Properties

Length: 307aa MW: 33894 Da PI: 6.8688

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41970373	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-18920	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.4	8.2e-16	36	85	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E++RR++iN++f+ Lr+l+P++ ++K + a+ L +++eY+++Lq Aan019478 36 RSKHSVTEQKRRSKINERFQILRDLIPNS----DQKRDTASFLLEVIEYVQYLQ 85 899***********************9....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.266	34	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-21	34	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-18	34	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.4E-13	36	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.04E-15	36	89	No hit	No description
SMART	SM00353	4.5E-12	40	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MKSSKRGHQE DDFENNNNSS KDGGKNSNYD KIDATRSKHS VTEQKRRSKI NERFQILRDL 60 IPNSDQKRDT ASFLLEVIEY VQYLQERVQK HEGSYQGYSA EPTKLMPWRN SHWRVPNFGH 120 PPVLRNDSGS APSLPVRFDE TVSTINTPPQ IPARSDPSGD LNRNLIDSQP DLQANIPVPD 180 GTLSHSTLGG SVCHVNRQST DIPAAGDGNQ QDELTVEGGT INISSVYSEG LLYSLTHALK 240 SSGVDLTQAS ISVQVDLGKR ANRGLTSGAS TAKDHENPQP SNHQPVGRSQ EFSNGENSDQ 300 PQKRQKT

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021976691.1	1e-151	transcription factor BIM2
Swissprot	Q9CAA4	5e-85	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A2U1L1K0	1e-141	A0A2U1L1K0_ARTAN; Myc-type, basic helix-loop-helix (BHLH) domain-containing protein
STRING	XP_002514584.1	1e-107	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	8e-85	BES1-interacting Myc-like protein 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]