PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan019479
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family NAC
Protein Properties Length: 250aa    MW: 28339.3 Da    PI: 9.8378
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55180026PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-108332PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.52.8e-49191395128
        NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglk 103
                frFhPtdeelvv+yLk+kv++ +l++ ++i+evd++k++Pw+Lp +    e+e +fFs+++ ky++g+r+nrat+sgyWkatg dk+++++ +++lvg+k
  Aan019479  19 FRFHPTDEELVVQYLKRKVHAFPLPA-SIIPEVDVCKSDPWELPGN---CEQERFFFSTKEVKYPNGNRSNRATQSGYWKATGLDKKIVTScNNQLVGMK 114
                9*************************.89***************44...46899***********************************9988899**** PP

        NAM 104 ktLvfykgrapkgektdWvmheyrl 128
                ktLvfy+g+ p+g++tdW+mheyrl
  Aan019479 115 KTLVFYRGKPPNGSRTDWIMHEYRL 139
                ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-5815162IPR003441NAC domain
PROSITE profilePS5100554.18315162IPR003441NAC domain
PfamPF023656.3E-2618139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MERLNFVKNG VLRLPPWVFR FHPTDEELVV QYLKRKVHAF PLPASIIPEV DVCKSDPWEL  60
PGNCEQERFF FSTKEVKYPN GNRSNRATQS GYWKATGLDK KIVTSCNNQL VGMKKTLVFY  120
RGKPPNGSRT DWIMHEYRLA TPNPQNPPQG MENWVICRIF LKKRGSNANR NDDETKPTIP  180
VISDCKSLKS KPIFYDFMAA GASKRRRTDL NLTPTSSASG SSGITDDASS CDEHEAISNK  240
LNDVSTLKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-511216315166NO APICAL MERISTEM PROTEIN
1ut4_B2e-511216315166NO APICAL MERISTEM PROTEIN
1ut7_A2e-511216315166NO APICAL MERISTEM PROTEIN
1ut7_B2e-511216315166NO APICAL MERISTEM PROTEIN
3swm_A3e-511216318169NAC domain-containing protein 19
3swm_B3e-511216318169NAC domain-containing protein 19
3swm_C3e-511216318169NAC domain-containing protein 19
3swm_D3e-511216318169NAC domain-containing protein 19
3swp_A3e-511216318169NAC domain-containing protein 19
3swp_B3e-511216318169NAC domain-containing protein 19
3swp_C3e-511216318169NAC domain-containing protein 19
3swp_D3e-511216318169NAC domain-containing protein 19
4dul_A2e-511216315166NAC domain-containing protein 19
4dul_B2e-511216315166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.37090.0leaf| trichome
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021997237.11e-141NAC domain-containing protein 83-like
SwissprotQ9FY933e-93NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A2U1P7330.0A0A2U1P733_ARTAN; NAC domain containing protein 83
STRINGcassava4.1_014491m1e-105(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-95NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]