PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan019722

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

GRAS

Protein Properties

Length: 258aa MW: 28653.2 Da PI: 10.042

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41942743	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-135969	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	57.1	3.7e-18	175	255	1	84
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 l++lLl+cA+ v+++d ++a++lL++++++asp gd +qRla++f+++L+arla+++s++ k l +++t ++ + a++l+ Aan019722 175 LRTLLLTCAQSVAADDRRKANELLNEIRQHASPFGDGTQRLAHCFANGLEARLAGTGSQIHKGLVSKKTC---AADYIRAYHLY 255 6789***********************************************************9999987...56666666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	15.052	149	258	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-15	175	255	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
RVSRSSSTGG LDSPASTADT FDLYNENQMM SQFRKGAEEA NKFLPTGNLL LGSNNIGQDQ 60 KREESKLSLT KPNIRKNPYR EDITEVEKQE RVIKQAAIFP DATLRSEEMD LIFLSSLGEG 120 KVALDSFRDT LRIEKIKDSV KDVEDTSLSN GKGKGKGRSK TRGRKPKKKK EVIDLRTLLL 180 TCAQSVAADD RRKANELLNE IRQHASPFGD GTQRLAHCFA NGLEARLAGT GSQIHKGLVS 240 KKTCAADYIR AYHLYMAX

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	170	RKPKKKKE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022036157.1	1e-119	scarecrow-like protein 9
Refseq	XP_022036158.1	1e-119	scarecrow-like protein 9
TrEMBL	A0A1B0T6T4	1e-166	A0A1B0T6T4_CHRMO; GRAS protein (Fragment)
STRING	XP_009622916.1	2e-79	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-43	GRAS family protein