PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan019917
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family C3H
Protein Properties Length: 282aa    MW: 30238.5 Da    PI: 9.1816
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41968984PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-59786PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.72.3e-0991115226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                k +lC++++    Ck+Gd+C+FaHg
  Aan019917  91 KSKLCNRYSTPEGCKFGDQCNFAHG 115
                668*********************9 PP
2zf-CCCH32.41.5e-10253276226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                kt+ C +fa+ G C +G++C+FaHg
  Aan019917 253 KTKMCENFAK-GSCTFGEKCHFAHG 276
                899*******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00356173257IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.7323260IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-63356IPR000571Zinc finger, CCCH-type
PfamPF146082.84055No hitNo description
Gene3DG3DSA:4.10.1000.105.5E-1187119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-789119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.389117IPR000571Zinc finger, CCCH-type
SMARTSM003560.02191116IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-691115IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.36E-15144225IPR004088K Homology domain, type 1
SMARTSM003224.8E-12151221IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.4E-16151220IPR004088K Homology domain, type 1
PROSITE profilePS5008414.215152216IPR004088K Homology domain, type 1
PfamPF000131.6E-11154218IPR004088K Homology domain, type 1
CDDcd001054.84E-15154216No hitNo description
Gene3DG3DSA:4.10.1000.101.0E-14248281IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-8250281IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-5251277IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.554251278IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-7253276IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDIRKRGFPF TKPNGAAKKF KSESEFLSSG IRSKSKPCMK YFSIEGCPFG ENCHFLYFFP  60
GGYSAVAQLM NLPPISTAPA TTQNGPTSAV KSKLCNRYST PEGCKFGDQC NFAHGDWELG  120
KAVAPTHEDP RTLGPIQSVP APQSTAASFG ASATAKISVD ASLAGAIIGT GGVNSKHICR  180
QTGVRLHIRD HESESNLKNI ELEGTFDQIN EAQAMVRELI LSLSIKPAVT GPLSRPPAMH  240
HGGPSHAPKT NIKTKMCENF AKGSCTFGEK CHFAHGAAEL RK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022000026.11e-135zinc finger CCCH domain-containing protein 14-like isoform X1
SwissprotQ7F8R02e-97C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2U1LT650.0A0A2U1LT65_ARTAN; Zinc finger, CCCH-type, K-like domain-containing protein
STRINGXP_009614706.11e-119(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-66C3H family protein